Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0429 ATGTACAGAGAGCGAGGAGTGGGATCCAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGGCATCAACGGCAAGGACCGCTCATCCTCCTCTTCTCTCTTAGCCGCCGCCGCCAAGGACACCCGCTCCGCCTCTGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCTGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAGTTCTTTTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTGTGCGGATTAAGCAGTCAAGTGCCTTACTACGATTATGCTCTGGATTTGATTTTGGATGTTGAGTCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCAGCAGCCGAGATGCTATATGGTCTGATTCATGCCCGGTATATACTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCGAGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGAACTACATTTCCTCACCTGTTCCTCATGACTTATGGACAACTAAAACCACAGAAACCATCACAGAGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCTTGA 861 0.4797 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAGINGKDRSSSSSLLAAAAKDTRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0429 286 SUPERFAMILY Casein kinase II beta subunit 97 285 IPR035991 GO:0005956|GO:0019887
Vra11g0429 286 MobiDBLite consensus disorder prediction 28 76 - -
Vra11g0429 286 MobiDBLite consensus disorder prediction 1 95 - -
Vra11g0429 286 PANTHER CASEIN KINASE II SUBUNIT BETA 1 285 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 218 239 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 PRINTS Casein kinase II regulatory subunit family signature 246 263 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 Gene3D - 197 271 - -
Vra11g0429 286 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 285 - -
Vra11g0429 286 MobiDBLite consensus disorder prediction 1 27 - -
Vra11g0429 286 SMART CK_II_beta_2 99 282 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 Pfam Casein kinase II regulatory subunit 99 282 IPR000704 GO:0005956|GO:0019887
Vra11g0429 286 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956|GO:0019887
Vra11g0429 286 ProSitePatterns Casein kinase II regulatory subunit signature. 200 231 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0429 Vra-Chr11 3109498 3112764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0429 K03115 - gmx:100799304 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0429 11 3109498 3112764 Vra11g0429 11 3109498 3112764 ECH
Vra11g0429 11 3109498 3112764 Vra7g1320 7 30088232 30091044 PCT
Vra7g1322 7 30111465 30114413 Vra11g0429 11 3109498 3112764 PCT