Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1313 ATGGCCGTTCAAGCTCAATATCCTTCCAATCTTCTCTTTCTAAACAGGAACAACGGCCAAGAACTCCTTCAGTATTCATTCCAACATCAACAACAACAACAAGGTTCCCTTTTAAACCAACCCCATATGCTATACAGCGACGATAACAACAACAACGACAATGGAAGTAACAACGTCAACGACAACATCAACAATTCTCGCAAGAGAGCCAGAGAAGACTCCACTGTTGCAAACAACACCACACCTTCTAATCTTATTAATCCCTTCTCTTTACAATCCCAACCTCCTCAACTTATTCATCTCTCTCAGTTGCATAATCATCAACAGAATGTCGTCTCTACCGGTCTCCGCTTATCCTTCGATGACCAACAACATCATCAACAACAACAAAAAAGGCTACCCCTTCATCACAATCATTCTCAACAACTCTTACTGCATGCCTCTCACTCTTCTGCTTTCTCATCTCTATTTTCCCAAGCCTTGGCTTCTCAAATCAAACAACAACGTGATGAAATTGATCAATTCCTCCTCGCCCAGGGAGAACAACTGCGGCGGACATTGGCGGAGAAGAGGCAGAAGCATTACAACGCGCTGCTGAGAGCGGCGGAGGAGGCGGTGGCACGGTGGCTCAGAGAGAAGGAGGCGGAAGTGGAGAAAGCCACCCGCAAGAACGCAGAGCTGGAAGCACGGGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCCGTGCCCAGGAAGCAACGGCGGCCACCCTCCAGGCCCAACTGCAGCAGACCATAATGTGTCAGGGCGGCGAGGAAGCGGCCGCCGGCGTATCGTGCGCCGTGGAAGGGCAGGCCGAGGATGCGGAGTCTGCCCACATCGACCCAGAGCGCGTGGTGTTAGCCGCGGCGCGTCCTAAATGCAGAGGGTGCACGAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACACCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1059 0.5203 MAVQAQYPSNLLFLNRNNGQELLQYSFQHQQQQQGSLLNQPHMLYSDDNNNNDNGSNNVNDNINNSRKRAREDSTVANNTTPSNLINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDQQHHQQQQKRLPLHHNHSQQLLLHASHSSAFSSLFSQALASQIKQQRDEIDQFLLAQGEQLRRTLAEKRQKHYNALLRAAEEAVARWLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAATLQAQLQQTIMCQGGEEAAAGVSCAVEGQAEDAESAHIDPERVVLAAARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1313 352 MobiDBLite consensus disorder prediction 41 91 - -
Vra7g1313 352 MobiDBLite consensus disorder prediction 41 64 - -
Vra7g1313 352 Pfam Zinc finger, C3HC4 type (RING finger) 304 344 - -
Vra7g1313 352 PIRSF SBP1_RNase_bind 1 352 IPR017066 -
Vra7g1313 352 MobiDBLite consensus disorder prediction 75 91 - -
Vra7g1313 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 352 IPR013083 -
Vra7g1313 352 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 351 - -
Vra7g1313 352 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 351 IPR017066 -
Vra7g1313 352 Coils Coil 199 244 - -
Vra7g1313 352 ProSiteProfiles Zinc finger RING-type profile. 305 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1313 Vra-Chr7 30006117 30007813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1313 305 341 Miscellaneous Gene Families AT2G21380 37.838 7.31e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1313 K19042 - gmx:100788924 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0432 11 3133582 3135434 Vra7g1313 7 30006117 30007813 PCT