Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1295 ATGAAAACAAGGAGAGGAAGACGCTCAGAGGCCTTTTGGCCCTCTCTTGTCATGAAGAAATGGTTAAACATAAAGCCGAAGGTGTATGATTTTAGTGAGGATGAAGTGGACACTGAAACTGAGAGTGAAGATGATGTTTGCTCTCTTAAAGACTCAAGAATGGGTGTGCGTGAAGATAATCCACTTAGAACACCATCCATATTATTCCCAAGTCAAACATCAGATGCGTCTTGTAAGGGCTATAACGCCAGGCATAGAAGAGGGAAATCAGAAACTCTCCGTGTTCAATACATAAATACAAAGGAAGTGAGGGTAACGATTGGCACCTGGAATGTTGCTGGAAGACTTCCATGTAAGGATCTTGAAATTGAGGACTGGCTTTGCACCAATGAGCCAGCAGATATTTACATTATTGGTTTCCAAGAGGTAGTCCCCTTGAATGCTGGAAATGTTCTTGGGGCAGAGGATAATACACCCATCCGGAATTGGGAAGCAATCATTAGAAGAACTCTAAACAAATCTTCTGAACCTGAAAGCAAGCCAAAAAGCTACAGTGCCCCTTCGTCTCCTGTTCTAAGAGCTTCTGCTTCTGCTTCTGCCGATGTTCTAGCAGACAGTATAGATGTTAATCCACTAGACACAATGAATGAGGAGTACATGGGAAGTTTTAACAAAGTTGAGCTACAACAAGAGGAAGTGAAAAGCAAATTCGGTATAGGAAGGAATTTACAGTTTAGGAAAATCAAAGACATTGATCCTCAGACCATACTTTACTGGCCTGAGCGTCCTCTAGATTCAGTCCCAGATACTGATTCCAGTTCAAAATTGCGCAGAGTGTGGAGCTCAGACAGAATTGGCTTTAACCAGACAGAGAAGGCTTCAAAATATGGCAGTGTAATGAAACGGACACACCATAGTTCGGGAAATTTGGGCTTGTTATGGAAAGAACAGCAAGTGATGCCTGAGGAAGTAATCGATAGCCTTGACGAGTTATCTGATGAGGAAGATGATGCTTTTCTTGAATTGCCAAATGACAACGAAGATAATGGAATAGGTGCCGTGAAATCACATCGTAAGTATGTCCGAATCGTCAGCAAGCAGATGGTAGGAATATACGTGTCTATTTGGGTGCAGAGGAGGTTAAGAAAGCACATTAACAACTTGAAAGTTTCTCCAGTTGGAGTTGGTCTCATGGGCTACATGGGAAACAAGGGGTCTGTTTCAGTTAGTATGTCTCTCTTTCAGTCACGTTTGTGCTTTGTTTGTTCGCATTTGACTTCTGGCCAGAAGGATGGTGCAGAAATAAGACGAAACTCGGATGTTCATGAAATTCTTCGCCGCACTCGTTTCTCCTCTGTCTTTGATACAGATCAGCCACAAACAATCCCATCTCACGAGTGTGATCGTATACTGTGGTTGGGAAAAGGAATAAAGCAACTTGAATATAAGCGTACAGAAAATAAACTCTCGGATCACCGACCAGTTAGTTCAATATTCTCCATTGACGTTGAAGTATTTGATCAACGAAAATTACAACGAGCCCTCAATTTCACAAGCTCAGCAGTACACCCTGAAGTTTTCCTTAAAGATGATGGAGAGTGGTCATACTAG 1611 0.4215 MKTRRGRRSEAFWPSLVMKKWLNIKPKVYDFSEDEVDTETESEDDVCSLKDSRMGVREDNPLRTPSILFPSQTSDASCKGYNARHRRGKSETLRVQYINTKEVRVTIGTWNVAGRLPCKDLEIEDWLCTNEPADIYIIGFQEVVPLNAGNVLGAEDNTPIRNWEAIIRRTLNKSSEPESKPKSYSAPSSPVLRASASASADVLADSIDVNPLDTMNEEYMGSFNKVELQQEEVKSKFGIGRNLQFRKIKDIDPQTILYWPERPLDSVPDTDSSSKLRRVWSSDRIGFNQTEKASKYGSVMKRTHHSSGNLGLLWKEQQVMPEEVIDSLDELSDEEDDAFLELPNDNEDNGIGAVKSHRKYVRIVSKQMVGIYVSIWVQRRLRKHINNLKVSPVGVGLMGYMGNKGSVSVSMSLFQSRLCFVCSHLTSGQKDGAEIRRNSDVHEILRRTRFSSVFDTDQPQTIPSHECDRILWLGKGIKQLEYKRTENKLSDHRPVSSIFSIDVEVFDQRKLQRALNFTSSAVHPEVFLKDDGEWSY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1295 536 Gene3D Endonuclease/exonuclease/phosphatase 84 197 IPR036691 -
Vra7g1295 536 SMART i5p_5 292 507 IPR000300 GO:0016791|GO:0046856
Vra7g1295 536 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 7 466 - -
Vra7g1295 536 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 467 530 - -
Vra7g1295 536 SUPERFAMILY DNase I-like 95 518 IPR036691 -
Vra7g1295 536 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 7 466 IPR045849 GO:0004445|GO:0046855
Vra7g1295 536 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 467 530 IPR045849 GO:0004445|GO:0046855
Vra7g1295 536 Gene3D Endonuclease/exonuclease/phosphatase 298 466 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1295 Vra-Chr7 29761489 29766493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1295 353 451 Acyl Lipid Metabolism Gene Families AT2G31830 33.333 6.51e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1295 K24221 - pvu:PHAVU_003G228700g 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0455 11 3362022 3367203 Vra7g1295 7 29761489 29766493 PCT