Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0911 ATGATGATGATTATGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTCCGAACCAGTGGAAGGGGACTTACCCGTAAAGTAGGGAGTAACAAGGTTGTGTCTTTTCAGAAGTTGGCATGGAATGGTTCATTTCCCTCTGGGCAGCTCGAAGTTGAAGCAAGACAGAAGAATAACAGAGAAGCAGCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGGTAAAGCCGCTTGCAAGGTTTTGGTCAACTATACCAAGTCATCCACGCAAGCTGAGGAGGTTTCCAACTTGATTGAGGCATTTGGTGGACAAGCTCTTACCTTCGCGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCATGGGGAACTGTTGATGTATTAGTGAATAATGCAGGAATTACACGAGATGGATTGTTGATGAGAATGAAGAAATCTCAGTGGCAGGAAGTTATTGATCTGAATCTTACTGGTGTTTTTCTCTGCACTCAGGCAGCATCAAAGATTATGACGATGAAAAAGAAGGGAAGGATAGTCAATATTACATCCGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGATTTATTGCATCTGATATGACTGCCTTGCTACGACCAGACATAGAGAAAAAAAGATTAGAGTTAATCCCCTTAGGAAGATTTGGTCAACCAGAAGAAGTTGCTGGACTTGTGGAATTTTTGGCTCTTAATCCTTCTGCTAATTACATCACTGGACAGGTGTTCACTATTGATGGAGGTATGGCAATGTAA 915 0.4361 MMMIMGSLARPNSLFFRTSGRGLTRKVGSNKVVSFQKLAWNGSFPSGQLEVEARQKNNREAAVVVVTGASRGIGRAIALSLGKAACKVLVNYTKSSTQAEEVSNLIEAFGGQALTFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAASKIMTMKKKGRIVNITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTALLRPDIEKKRLELIPLGRFGQPEEVAGLVEFLALNPSANYITGQVFTIDGGMAM* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0911 304 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 55 304 - -
Vra7g0911 304 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 64 303 IPR011284 GO:0004316|GO:0006633|GO:0051287
Vra7g0911 304 CDD BKR_SDR_c 63 302 - -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 63 80 IPR002347 -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 138 149 IPR002347 -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 185 201 IPR002347 -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Vra7g0911 304 PRINTS Glucose/ribitol dehydrogenase family signature 265 285 IPR002347 -
Vra7g0911 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 149 IPR002347 -
Vra7g0911 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 199 IPR002347 -
Vra7g0911 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Vra7g0911 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 63 303 IPR036291 -
Vra7g0911 304 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 55 304 - -
Vra7g0911 304 Pfam Enoyl-(Acyl carrier protein) reductase 68 302 - -
Vra7g0911 304 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 198 226 IPR020904 GO:0016491
Vra7g0911 304 Gene3D - 60 304 - -
Vra7g0911 304 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 62 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0911 Vra-Chr7 20172176 20175602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0911 60 304 Acyl Lipid Metabolism Gene Families AT1G24360 71.837 1.38e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0911 K00059 - gmx:100811718 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1417 2 22328960 22332371 Vra7g0911 7 20172176 20175602 PCT