Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1417 ATGGCTTCTATTGCCGGATCCAATTGTGTCGCTCTTCGAACCGCCAACTTCGCCGCCTCTGGTAACCGGAAAGTCTGTCAGATCCGACAATGGTCTCCGGTTCTCACGAATCACAGTTCCGTTTCTGGTCTTCGTCACCAATCGAATGCTCCGTTTAGATTCTCTGGTGTGAGAGCGCAGGTTGCTACTCTGGAGGAAGCGGGAACCGGAGCAACTCAGAAAGTGGAAGCGCCTGTTGTAGTGGTGACTGGAGCTTCCAGAGGCATTGGCCGAGCAATTGCACTATCGTTAGGCAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCAAGGTCATCGAAGGAAGCCGAGGAGGTTTCCAAGGAGATTGAGGAACTTGGTGGGCAAGCTCTTACATTTGGTGGAGATGTTTCTAACGAAGCTGATGTGGAGGCTATGATTAAAACTGCAGTGGATGCGTGGGGAACAGTTGATGTATTGATAAACAATGCAGGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTAACTGGTGTTTTTCTTTGCATACAGGCTGCTGCTAAAGTTATGATGAAGAAAAAGAAGGGAAGGATTGTCAATATTGCGTCAGTTGTTGGTTTGGTTGGCAATGTTGGGCAAGCCAATTACAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACAGTTGCAAAGGAATACGCTAGCAGAAACATCACCGTTAATGCAGTTGCTCCCGGGTTTATTGCATCTGACATGACTGCCAAGTTAGGACAGGACATTGAGAAAAAGATATTGGAGACAATCCCATTAGGAAGATATGGCCAACCAGAGGAAGTTGCCGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTTCTAGTTACATCACTGGGCAGGTTTTCACCATTGATGGAGGCATGGTGATGTAA 963 0.4611 MASIAGSNCVALRTANFAASGNRKVCQIRQWSPVLTNHSSVSGLRHQSNAPFRFSGVRAQVATLEEAGTGATQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEELGGQALTFGGDVSNEADVEAMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCIQAAAKVMMKKKKGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDIEKKILETIPLGRYGQPEEVAGLVEFLALNQASSYITGQVFTIDGGMVM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1417 320 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 80 319 IPR011284 GO:0004316|GO:0006633|GO:0051287
Vra2g1417 320 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 28 320 - -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 154 165 IPR002347 -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Vra2g1417 320 PRINTS Glucose/ribitol dehydrogenase family signature 281 301 IPR002347 -
Vra2g1417 320 Pfam Enoyl-(Acyl carrier protein) reductase 84 318 - -
Vra2g1417 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Vra2g1417 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 320 IPR036291 -
Vra2g1417 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 165 IPR002347 -
Vra2g1417 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Vra2g1417 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Vra2g1417 320 Coils Coil 108 128 - -
Vra2g1417 320 Gene3D - 77 320 - -
Vra2g1417 320 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 78 258 - -
Vra2g1417 320 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 28 320 - -
Vra2g1417 320 CDD BKR_SDR_c 79 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1417 Vra-Chr2 22328960 22332371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1417 2 320 Acyl Lipid Metabolism Gene Families AT1G24360 66.771 2.39e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1417 K00059 - gmx:100809809 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1417 2 22328960 22332371 Vra7g0911 7 20172176 20175602 PCT