Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0616 ATGTCTACAAGCCCCCCTCCTATGCTTTTCTCCACAGCCACCACAGACAACAGCCACCAAAGCCAACAATTGAGCCACACACACCTCATCCACCTGTTGAACCAACACACCTCTATGCCTCAACTCAAGCAAATTCACGCGCAAACGCTACGAACAGTTGACACCAACCACCCACAAGCTCTTTTTCTCTATGCAAGAATTCTTCTTTACTCCTCTCTGGCTGATCTCAACTACGCCACTCGTGTCTTTCACCACTTTTCGCACCCCAATTCTTTCATGTGGAACACCCTCATAAGAGCCTACGCTCGAAGCACCAATACCAACCACAAACACAAGGCCATGGAGCTTTACAAAGCAATGGTGACGGGGAAAGAGAATACCGCAGTTCCCGATAACCACACGTTCCCTTTTGTTCTGAAGGCTTGCGCTTACACGTTTTCTATTTGTGAGGGGAAACAGGTGCATGCGCACGCTTTGAAACATGGGTTTGAGTTAGACACACACGTTTGTAACAGTTTGATTCATTTTTATGCGACATGTGGTCGCTTAGATTCGGCAGAGAAAATATTTTATAAGATGAATGAGAGAAGCGAGGTTTCCTGGAATATCATGATTGATTCTTACGCAAAGGGTGCAAAGTTTGACACTGCTTTGAAGATGTTTGGAGAGATGCAGAAGGAGCATGACCCTGATGGGTATACTATGCAGAGTGTTTTCAGTGCTTGTGCTGGTTTGGGTTCTTTATCTTTGGGTTTGTGGGCACATGCTTATATTTTGAAAAAGTGTGACAAGAATATTGTGGATGATGTTTTGGTCAACACTGGTTTGGTGGATATGTATTGCAAATGTGGGGAGTTGGAAATTGCAAAGCAAGTGTTTGAAAGCATGCCTGCTAGAGATGTAAATTCATGGAATTCAATTATCATGGGTTTTGCAATGCATGGTAAGGCTGAAGCTGCGTTGGACTATTATGTCAGAATGGTCAAGTTAGAGAAAATTGTTCCCAATTCAATCACTTTTGTTGGTGTTTTATCTGCATGTAACCATAGAGGAATGGTAGACGAGGGCATTGTTCATTTTGACATGATGAATAAGGAGTACAATGTGGATACAAGATTAGAGCATTACGGTTGTCTTGTTGACCTTTTCGCTCGAGCTGGGCGCATCGATGAGGCTCTAAAAGTGGTCTCAGAAATGCCAATCAAACCAGATGGTGTAATTTGGAGGAGTCTTTTGGATGCTTGTTGCAAGCAACACGCAAGTGTTGAGCTAAGTGAAGAAATGGTAAAGCAAATATTTGAGTCAACGGGGAGTGTGTGTAGTGGTGTTTATGTGCTTTTGTCAAAAGTATATGCTTCAGCTTGTAGGTGGAATGATGTAGGGTTGCTTAGAAAACTAATGAGTGATAAGGGTGTGACTAAAGAACCTGGCTGCAGCTTAATAGAGATAGATGGAACGGTTCATGAATTTTTTGCAGGGGACACCACTCATCCACAGAGTGAAAATATATATAAGTTTGTGAGTGAAATCGATGACAAGTTACAATCAATAGGTTATTTACCCGACTACTCAGGAGCAACTATGGTTGATGAGGCTAACGATGGTAAACAGAATACTCTAAGATTGCATAGTGAGAGACTTGCCATAGCATTTGGAATCTTGAACTCAAGACCAGGCATTCCAATTAGAGTGTTCAAGAATCTTAGGGTGTGCAATGATTGCCACAGGGTTACCAAGTTGATCTCCAGAATATATAATGTGGAGATAATTGTAAGAGATCGAGCCCGATTCCATCACTTTAAAGACGGAACTTGTTCTTGTATGGATTATTGGTGA 1836 0.4216 MSTSPPPMLFSTATTDNSHQSQQLSHTHLIHLLNQHTSMPQLKQIHAQTLRTVDTNHPQALFLYARILLYSSLADLNYATRVFHHFSHPNSFMWNTLIRAYARSTNTNHKHKAMELYKAMVTGKENTAVPDNHTFPFVLKACAYTFSICEGKQVHAHALKHGFELDTHVCNSLIHFYATCGRLDSAEKIFYKMNERSEVSWNIMIDSYAKGAKFDTALKMFGEMQKEHDPDGYTMQSVFSACAGLGSLSLGLWAHAYILKKCDKNIVDDVLVNTGLVDMYCKCGELEIAKQVFESMPARDVNSWNSIIMGFAMHGKAEAALDYYVRMVKLEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMNKEYNVDTRLEHYGCLVDLFARAGRIDEALKVVSEMPIKPDGVIWRSLLDACCKQHASVELSEEMVKQIFESTGSVCSGVYVLLSKVYASACRWNDVGLLRKLMSDKGVTKEPGCSLIEIDGTVHEFFAGDTTHPQSENIYKFVSEIDDKLQSIGYLPDYSGATMVDEANDGKQNTLRLHSERLAIAFGILNSRPGIPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0616 611 Pfam PPR repeat family 197 243 IPR002885 -
Vra7g0616 611 Pfam PPR repeat family 300 347 IPR002885 -
Vra7g0616 611 PANTHER OS01G0913400 PROTEIN-RELATED 22 552 - -
Vra7g0616 611 Pfam E+ motif 487 513 IPR046849 -
Vra7g0616 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vra7g0616 611 Gene3D Tetratricopeptide repeat domain 258 327 IPR011990 GO:0005515
Vra7g0616 611 Gene3D Tetratricopeptide repeat domain 328 490 IPR011990 GO:0005515
Vra7g0616 611 Pfam PPR repeat 275 299 IPR002885 -
Vra7g0616 611 Pfam PPR repeat 375 399 IPR002885 -
Vra7g0616 611 Pfam PPR repeat 169 196 IPR002885 -
Vra7g0616 611 Pfam PPR repeat 92 104 IPR002885 -
Vra7g0616 611 Pfam DYW family of nucleic acid deaminases 518 611 IPR032867 GO:0008270
Vra7g0616 611 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g0616 611 PANTHER BNAC04G18690D PROTEIN 22 552 - -
Vra7g0616 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Vra7g0616 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Vra7g0616 611 TIGRFAM PPR: pentatricopeptide repeat domain 169 196 IPR002885 -
Vra7g0616 611 TIGRFAM PPR: pentatricopeptide repeat domain 376 399 IPR002885 -
Vra7g0616 611 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Vra7g0616 611 TIGRFAM PPR: pentatricopeptide repeat domain 199 227 IPR002885 -
Vra7g0616 611 Pfam E motif 419 482 IPR046848 -
Vra7g0616 611 Gene3D Tetratricopeptide repeat domain 152 251 IPR011990 GO:0005515
Vra7g0616 611 Gene3D Tetratricopeptide repeat domain 13 151 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0616 Vra-Chr7 11452543 11456867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0616 43 611 Glycoside Hydrolase AT3G49170 34.602 2.30e-119 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0616 - - gmx:100791183 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0616 7 11452543 11456867 Vra11g1231 11 13762334 13765842 PCT