Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1231 ATGGCAATGTCCATTCTCCAATGTATTTCACATTCTCCCACAGAAGTCAACACAGAAGTTGCACTTCAACCTTCACCCTCCATTCTTTCTCTAGTACCCAAATGCACCTCTCTCAGAGAGCTCAAGCAAATCCAAGCCTACACCATCAAAACCCACCTCCACAACACCCACACCGTCCTCACAAAGCTCATAAGTTTCTGCACTTCCAATCCCACAAATGCTTCCATGGATCATGCCCACCAAATGTTTGATCAAATTCCCCAGCCAGACATTGTTCTGTTCAACACCATGGCACGTGGGTATGCGCGATTTGATGACCCTCTCAGAGCAATTCTTCTTTTTTGTCAGGTTTTGTTCTCTGGCCTCCTCCCAGATGACTACACTTTCTCCTCTCTTTTCAAGGCCTGTGCAAGGCTCAAAGCGCTTCAGGAAGGTAAACAGCTGCATTGCCTTGCTGTTAAACTTGGGGTCAGTGGTAACATGTATGTGTGCCCAACACTTATTAACATGTACACTGCCTGCAATGACATGGATGCTGCTAGGAGGGTCTTTGACAAGATCGATGAACCGTGTGTCGTCGCTTATAATGCGATCATCACGAGCTGTGCTCGGAGTAGCCAGCCCAATGAGGCCTTGGCTTTGTTCAGAGAGTTGCAGGAGAGTGGCCTCAAGCCTACTGATGTCACCATGCTTGTTGCTCTTTCCTCGTGCGCTTTGCTTGGGGCGTTGGACTTAGGGAAGTGGATCCATGAGTATGTCAAGAAGAATGGGTTTGACCAATATGTCAAGGTGAATACTGCTCTTATAGATATGTATTCTAAATGTGGGAGTTTGGAGGACGCTGTTTCTGTGTTCAGGGAGATGCCTAGGAGAGACACACAAGCGTGGTCGGCGATGATTGTTGGCTATGCAACACATGGGCATGGATCCCAAGCCTTATCAATGTTGGAGGAAATGAAGAAGGCAAAAGTGCAGCCTGATGAGATAAGTTTTTTAGGTATACTCTATGCCTGCAGTCACAATGGATTGGTAGAGGAAGGTTATGATCACTTCTATAGTATGATTCATGAGTATGGGATTGTTCCAAGTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGCTTGGAAGAGGCGTATAAGTTCATAGATGAGTTGCCGATCAAGCCGACACCAATTCTGTGGCGGACTTTGCTATCTTCTTGTAGCAGTCATGGAAACGTGGAAATGGCAAAGCAAGTAATTCAGAGAATCTTTGAGCTGGATGATTCCCATGGTGGGGATTATGTCATTTTGTCAAACTTGTATGCAAGAAATGGAAGATGGGATGATGTGAACTACCTAAGGAAAACGATGGCAGCCAAAGGAGCAATGAAAGTCCCTGGTTGTAGCTCAATAGAGGTCAACAATGTAGTGCATGAATTCTTTGCCGGGGATGGAGTTCGTTCCACTTCAACCGTATTGCACCGTGCACTCGACGAATTGGTAAAGGAATTGAAGCTGGCTGGGTATGTACCTGACACATCTCTGGTCTTTTATGCAGACATAGAAGATGAAGAGAAAGAAATTGTTCTTAGATATCACAGTGAGAAACTGGCCATAACTTATGGTCTTCTGAATACTCCCCCTGGAACAACAATTCGTGTGGTCAAGAATCTTAGAGTCTGTGTGGATTGCCACAACGCTGCTAAATTTATATCATTGATCTTTGGTAGGCAAATTATTCTAAGAGATGTCCAGCGATTTCATCATTTTAAAGATGGGAAATGCTCCTGTGGGGGTTACTGGTAG 1803 0.4515 MAMSILQCISHSPTEVNTEVALQPSPSILSLVPKCTSLRELKQIQAYTIKTHLHNTHTVLTKLISFCTSNPTNASMDHAHQMFDQIPQPDIVLFNTMARGYARFDDPLRAILLFCQVLFSGLLPDDYTFSSLFKACARLKALQEGKQLHCLAVKLGVSGNMYVCPTLINMYTACNDMDAARRVFDKIDEPCVVAYNAIITSCARSSQPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGKWIHEYVKKNGFDQYVKVNTALIDMYSKCGSLEDAVSVFREMPRRDTQAWSAMIVGYATHGHGSQALSMLEEMKKAKVQPDEISFLGILYACSHNGLVEEGYDHFYSMIHEYGIVPSIKHYGCMVDLLGRAGRLEEAYKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKQVIQRIFELDDSHGGDYVILSNLYARNGRWDDVNYLRKTMAAKGAMKVPGCSSIEVNNVVHEFFAGDGVRSTSTVLHRALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGGYW* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1231 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Vra11g1231 600 Pfam E motif 409 471 IPR046848 -
Vra11g1231 600 Pfam PPR repeat 367 390 IPR002885 -
Vra11g1231 600 Pfam PPR repeat 266 291 IPR002885 -
Vra11g1231 600 Pfam DYW family of nucleic acid deaminases 507 600 IPR032867 GO:0008270
Vra11g1231 600 PANTHER BNAA02G26650D PROTEIN 18 586 - -
Vra11g1231 600 Gene3D Tetratricopeptide repeat domain 264 496 IPR011990 GO:0005515
Vra11g1231 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vra11g1231 600 Pfam PPR repeat family 190 237 IPR002885 -
Vra11g1231 600 Pfam PPR repeat family 89 138 IPR002885 -
Vra11g1231 600 Pfam PPR repeat family 292 338 IPR002885 -
Vra11g1231 600 Gene3D Tetratricopeptide repeat domain 34 169 IPR011990 GO:0005515
Vra11g1231 600 Gene3D Tetratricopeptide repeat domain 170 263 IPR011990 GO:0005515
Vra11g1231 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vra11g1231 600 SUPERFAMILY TPR-like 255 430 IPR011990 GO:0005515
Vra11g1231 600 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Vra11g1231 600 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Vra11g1231 600 TIGRFAM PPR: pentatricopeptide repeat domain 266 292 IPR002885 -
Vra11g1231 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1231 Vra-Chr11 13762334 13765842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1231 27 600 Glycoside Hydrolase AT3G49170 37.801 1.14e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1231 - - gmx:100817794 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1231 11 13762334 13765842 Vra7g1893 7 38454817 38457645 PCT
Vra7g0616 7 11452543 11456867 Vra11g1231 11 13762334 13765842 PCT