Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0238 ATGGGGTTTCTCAACCTATTTCTTGTAGCTTCCTTTCCGGTTATCAAAGTGTTACTCATTACTGCACTTGGACTGTTTCTTGCACTGGATGGCGTATCGATATTGGGAAATGATGCAAGGAAGATAGTGAATCAGCTTGGGTTTTATGTGTTTTTTCCGTCGCTGGTGGGTAGCAATCTGGCCAAATCGATTACCTTTGAGAGTGTTGTTAAGTTGTGGTTCATGCCCGTGAATATTCTTGCCACATTCATATTAGGGTCGGCCTTGGGATGGATTTTGATAAAAATTACAAGGCCTCCCAAATACATGGAAGGTCTAATCTTGGGTTGTTGTTCAGCTGGAAATCTAGGGAACTTTCCTATGATCATTGTTCCGGCTATATGTAAAGAGAAAGACAGTCCTTTTGGAGAACCCGATCTCTGCTATCAATATGGAATGACTTATGCTGTACTTTCTATGGCGATTGGAGCCGTTTTTCTATGGGGATATGTTTACAACATAATGCGGATTTGTTCAAGTAGAATCCAGAAAGAAGACACTACAAGCAACGACATATTGAAGGCTTCAAGGGAGATATCAGAGTCAGACCCCAATAATCTTTCAGAAACACTTATTCCTACAGAAGACACCATGGATGATAAATATACTATACTGCTTTCTGATGAAGAACCAGAGAAGAAAGTTTCATTCCCAAGCAAAATTAAGCACCATTTGAGGGTGATCTCAAGCAACTTAAACTTGAAGTCCGTCTTTGCACCATCAACCATCGGAGCTATTGTTGGCTTTTTCATCGGTGTAACCCCCCAAATTCGTAATTTCACCATAGGCAATGATGCTCCTCTTCGTGTGGTCGAAGACTCTGCTACCATGTTGGGTGACGCAGCCATCCCTACTATGACTCTGATAATGGGTGGAAACCTACTTAAAGGTTTGAAAGGATCAAGCACTCCAGTGTGGAGCATTGTGGGGATTGTAGTTGTGAGATATATTTTGCTCCCTGTTTTGGGTATAGGAGTTGTGAAAGCAGCTATACATTTGAGTCTGGTGCCTTCAGATTCTTTGTATCAGTTTGTGCTTCTGCTTCAATATGCACTTCCACCAGCCATGAATATAGGCACCATTGCTCAGTTGTTCGGATCTGGTGAAAGTGAATGTTCTGTAATCATGTTATGGACGTATGGGTTTGCTTCAATTGCAGTTACCCTTTGGTCAACTTACTTTATGTTCATAGTCTCTTGA 1239 0.4149 MGFLNLFLVASFPVIKVLLITALGLFLALDGVSILGNDARKIVNQLGFYVFFPSLVGSNLAKSITFESVVKLWFMPVNILATFILGSALGWILIKITRPPKYMEGLILGCCSAGNLGNFPMIIVPAICKEKDSPFGEPDLCYQYGMTYAVLSMAIGAVFLWGYVYNIMRICSSRIQKEDTTSNDILKASREISESDPNNLSETLIPTEDTMDDKYTILLSDEEPEKKVSFPSKIKHHLRVISSNLNLKSVFAPSTIGAIVGFFIGVTPQIRNFTIGNDAPLRVVEDSATMLGDAAIPTMTLIMGGNLLKGLKGSSTPVWSIVGIVVVRYILLPVLGIGVVKAAIHLSLVPSDSLYQFVLLLQYALPPAMNIGTIAQLFGSGESECSVIMLWTYGFASIAVTLWSTYFMFIVS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0238 412 Pfam Membrane transport protein 12 403 IPR004776 GO:0016021|GO:0055085
Vra7g0238 412 PANTHER - 1 411 IPR045033 GO:0080162
Vra7g0238 412 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0238 Vra-Chr7 3683258 3686316 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0238 K24139 - gmx:100810166 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0238 7 3683258 3686316 Vra7g0238 7 3683258 3686316 ECH
Vra11g0886 11 7592515 7596852 Vra7g0238 7 3683258 3686316 PCT