Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0232 ATGGACGTTCGTCGTCGATCGCTTCCCGCCTCCGGTGACAGCGTCAAAACCCAGAAGCTCAATAAAAACGATACCCTCACCGCCACACCCACTCACTCCCACGCCCCATCGCAAACGCTACTCCCTCTCTACCTTACCAACGCCCTTTTCTTCGCTTTATTCTTTTCCGTCGCATACTTCCTCCTCCACCGCTGGCGCGACAAGATCCGCACCTCCACTCCCCTCCATGCAGTCACTCCCTCCGAAACAGCCGCCATAGTCTCCCTCGTCGCCTCTGCTGTCTACCTCCTCGGCTTCTTCGGCTTCGCCTCCCGTGCCTCCCTCGACGAGCTCTCTGATGAGGAGACTATCCTCCGCGAAGACTCTCGCACCCCTGGCCCCTGCCCCGCCGCGCTCCTTGACTCCCCTGCCTCCAAGAAAAAACACAATCAAATCCCTCTCCCACGCTCCAAATCTGTCGACAAATCGGTGGAGTTATCAAATCCTCCACCTCTAAAACCTTCTAACGAGGCAGCACGAGCACCATCACCGATTTCGTTGTCTCCCGAGGACGACGAGGTCGTTGAGGCCGTGGTTTCGGGGTCGGTTCCGTCCTACGCCTTGGAGTCGCGTCTTGGGGATTGCGGTCGGGCAGCTACGATCCGGCGTGCGGCGGTGCAGAGGCTGACGGGTCGGTCGCTGGAGGGTTTACCCGTGCAGGGGTTCGACTACGATTCGATATTGGGGCAGTGCTGCGAGATGCCGATAGGGTTCGTGCAGATTCCCGTTGGAGTGGCGGGGCCGTTGTTGTTGGATGGGAAGGAATACACTGTGCCTATGGCCACCACTGAAGGATGTCTGGTTGCCAGCACCAACAGAGGGTGCAAAGCTATTTACGTCTCTGGTGGTGCTTCTTCCGTGCTTCTCAGGGATGGCATGACCAGAGCACCCGTTGTGAGGTTGCCCTCTGCTCAGCGCGCTGCGCAGTTGAAGTTCTTCTTGGAGGATCCTCTCAACTACGATTCCCTTGCTGTCGTTTTCAACAAGTCGAGCAGATTTGCCAGGCTGCAGAGTATTCAGTGTGCTATTGCGGGCAAGAATCTGTACATGAGATTCCGATGCAGCACTGGTGATGCCATGGGAATGAACATGGTGTCTAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGACAGACTTCCCTGACATGGATGTTATTGGAATCTCTGGAAATTTCTGTTCGGACAAGAAAGCAGCAGCTGTGAACTGGATTGAAGGACGTGGGAAGTCGGTGGTGTGTGAGGCTATAATTAAGGAGGAGGTGGTGAATAAGGTGTTGAAGACCAGCGTAGAGGCCCTAGTGGAGCTTAACATGCTAAAAAACCTTACCGGTTCAGCCATGGCTGGTGCTCTTGGTGGGTTCAATGCCCATGCCAGCAATATCGTGTCTGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCCCACTGCATCACCATGATGGAAGCTGTCAATGGTGGCAAGGACCTTCACGTGTCTGTGACCATGCCCTCGATTGAGGTTGGTACTGTAGGAGGAGGCACACAACTCGCATCTCAGTCTGCATGTCTTAATTTACTTGGTGTGAAGGGTGCAAGTACAGAATCTCCCGGTGCAAATTCTAGGCTACTGGCCACCATTGTAGCCGGTTCAGTGTTGGCGGGGGAGCTATCACTGATGTCAGCAATTGCAGCTGGACAACTTGTTAAGAGCCATATGAAATACAACAGATCTAACAGGGATATGTCTAAAATTGTCCCATAA 1797 0.5376 MDVRRRSLPASGDSVKTQKLNKNDTLTATPTHSHAPSQTLLPLYLTNALFFALFFSVAYFLLHRWRDKIRTSTPLHAVTPSETAAIVSLVASAVYLLGFFGFASRASLDELSDEETILREDSRTPGPCPAALLDSPASKKKHNQIPLPRSKSVDKSVELSNPPPLKPSNEAARAPSPISLSPEDDEVVEAVVSGSVPSYALESRLGDCGRAATIRRAAVQRLTGRSLEGLPVQGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASSVLLRDGMTRAPVVRLPSAQRAAQLKFFLEDPLNYDSLAVVFNKSSRFARLQSIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVNKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNGGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSNRDMSKIVP* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0232 598 MobiDBLite consensus disorder prediction 11 34 - -
Vra7g0232 598 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 179 577 IPR009029 GO:0015936|GO:0016616
Vra7g0232 598 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 597 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 184 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vra7g0232 598 CDD HMG-CoA_reductase_classI 185 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vra7g0232 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 364 378 IPR023076 GO:0004420
Vra7g0232 598 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 184 588 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 Pfam Hydroxymethylglutaryl-coenzyme A reductase 212 588 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 Gene3D - 180 254 IPR023282 GO:0004420
Vra7g0232 598 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 305 421 IPR009023 -
Vra7g0232 598 MobiDBLite consensus disorder prediction 118 181 - -
Vra7g0232 598 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 597 - -
Vra7g0232 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 573 586 IPR023076 GO:0004420
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 244 265 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 271 291 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 362 380 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 402 427 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 453 479 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 507 528 IPR002202 GO:0004420|GO:0015936
Vra7g0232 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 519 526 IPR023076 GO:0004420
Vra7g0232 598 Gene3D - 255 583 IPR023074 GO:0004420
Vra7g0232 598 Gene3D - 305 421 IPR009023 -
Vra7g0232 598 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0232 Vra-Chr7 3561397 3565216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0232 41 594 Lipid Metabolism Gene Families AT1G76490 71.964 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0232 K00021 - gmx:100815480 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0883 11 7537972 7541376 Vra7g0232 7 3561397 3565216 PCT