Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0883 ATGGAAGTTCGCCGGCGACCCAACCGCTCCTCTCGCGTCGGCGAATCCCTGAAACAACCCGACCCTAATCCAAACCACGACGCCCACTCCCACCTCACCAACGCCCTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGATGGCGGGAGAAGATCCGTACCTCCACCCCCCTTCACCTCGTTACGCTCTCCGAGATTGCTGCAATCCTCTCCCTCATCGCCTCCTTCGTCTACCTAATGGCCTTCTTCGGCATTACCTTCATCCTCCACCCCTTCCTTAACTCCCGCACCTCCCCCGACGACGACCTCGACCTCCACATTACCAAACCCCCCGCCCCACCTATCTCCCCGCCGCTGCCGCTCCCTCAAGACAATCGTGACCTCGTCCTCGCCGTCGTCTCCGGCTCCGTCCCCTCCTACTCCCTCGAGTCCCGCCTCGGAGACTGCCGTCGCGCCGCAGAGATCCGCCGCGAGGCGGTCGAGAGCCTCACCGGGAGGTCCCTCAAGGGCCTCCCTGTCGAAGGCTTCGATTACGACTCCATTCTCGGGCAGTGCTGTGAGATGCCGATTGGGTTCGTTCAGATCCCGGTAGGCGTCGCCGGACCGCTACTTCTCGACGGGAACGAGTACACCATCCCCATGGCCACCACCGAGGGGTGCTTGGTCGCCAGCACCAATAGAGGCTGCAAGGCCATTCACCTCTCCGGCGGAGCTTCCTCCATGCTCCTCCGTGACGCCATGACCAGAGCCCCCGTGGTTCGGTTCGCCTCCGCCAAACGCGCCTCTCAGCTCAAGTTCTTCCTCGAAGATCCTCTCAATTTCGAATCCCTCGCCGTCGTTTTCAATAAGTCAAGCAGGTTTGCGAGATTGCAGGACATAAAAGTAGCAATGGCAGGGAAGAATCTATATATTAGATTCAGTTGCACTACAGGAGATGCCATGGGGATGAACATGGTTTCGAAAGGAGTTCAGAACGTGCTTAATTTTCTTCAGAGCGACTTCCCTGACATGGACGTTCTTGGGATATCAGGGAATTTCTGTTCGGATAAGAAAGCTGCGGCAGTGAACTGGATTGAGGGGAGAGGGAAGTCGGTGGTGTGCGAGGCTCTTATTAAGGAGGAGGTGGTTAAGAAAGTGTTGAAGACCAGCGTGGAGGCTTTGGTGGAACTTAATATGTTGAAGAACCTTACTGGGTCAGCCATGGCGGGTGCTCTTGGTGGCTTCAATGCCCATGCTAGTAACATCGTTTCTGCAGTTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTAGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTCAACGACGCCAAGGACCTTCACATCTCTGTCACCATGCCTTCCATTGAGGTGGGTACAGTTGGAGGGGGCACACAACTGGCATCTCAATCAGCTTGTCTTAATCTACTGGGGGTTAAGGGTGCGAGCAAGGAGTCCCCCGGTTCAAATTCTAGGTTACTAGCAACCATAGTAGCTGGTTCAGTCCTCGCCGGAGAACTCTCACTCATGTCTGCAATTTCAGCCGGCCACCTTGTCAATAGCCATATGAAATACAACAGGTCTTGCAAGGATATCTCTCAAGTTGTTTCTTAA 1632 0.5521 MEVRRRPNRSSRVGESLKQPDPNPNHDAHSHLTNALFFTLFFSVAYFLLHRWREKIRTSTPLHLVTLSEIAAILSLIASFVYLMAFFGITFILHPFLNSRTSPDDDLDLHITKPPAPPISPPLPLPQDNRDLVLAVVSGSVPSYSLESRLGDCRRAAEIRREAVESLTGRSLKGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGNEYTIPMATTEGCLVASTNRGCKAIHLSGGASSMLLRDAMTRAPVVRFASAKRASQLKFFLEDPLNFESLAVVFNKSSRFARLQDIKVAMAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLNFLQSDFPDMDVLGISGNFCSDKKAAAVNWIEGRGKSVVCEALIKEEVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNDAKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAISAGHLVNSHMKYNRSCKDISQVVS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0883 543 MobiDBLite consensus disorder prediction 1 25 - -
Vra11g0883 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 518 531 IPR023076 GO:0004420
Vra11g0883 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 27 543 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 Gene3D - 200 519 IPR023074 GO:0004420
Vra11g0883 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 309 323 IPR023076 GO:0004420
Vra11g0883 543 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 129 533 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 251 366 IPR009023 -
Vra11g0883 543 Gene3D - 250 366 IPR009023 -
Vra11g0883 543 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 127 523 IPR009029 GO:0015936|GO:0016616
Vra11g0883 543 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 128 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vra11g0883 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 464 471 IPR023076 GO:0004420
Vra11g0883 543 CDD HMG-CoA_reductase_classI 131 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vra11g0883 543 Pfam Hydroxymethylglutaryl-coenzyme A reductase 157 533 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 189 210 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 236 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 307 325 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 372 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 424 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 452 473 IPR002202 GO:0004420|GO:0015936
Vra11g0883 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 27 543 - -
Vra11g0883 543 Gene3D - 127 199 IPR023282 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0883 Vra-Chr11 7537972 7541376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0883 1 539 Lipid Metabolism Gene Families AT1G76490 67.979 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0883 K00021 - gmx:100790033 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0883 11 7537972 7541376 Vra11g0883 11 7537972 7541376 ECH
Vra11g0883 11 7537972 7541376 Vra7g0232 7 3561397 3565216 PCT