Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0106 ATGCTCTCTCTCACACTCACTTCCTCTCACTTTCATCTTCTTCTCACTCTCTCACTGTTCCTAACCTCATTCGTTACCGATTCAGCCACGCATTGGAGCGACACCCAACTTCTCAAGGAACTAAAGAACAACCTTCACCCTGCTTCCATTACCCCAGGCTCTTGCATCTTCTCCTGGGACTTCTCCTATGATCCCTGCGACAACCTCTTCACTGACAAGTTCACCTGCGGCTTCAGGTGCGACGCCGTCGTTTCCGGAACCACTCGGCTCACCGAACTCACACTCGATCCCGCTGGTTACTCCGGCACGCTCTCCGCCACCTGGAACCTCCCCTACCTCCAAACTCTCGACGTCTCAAACAACTTCTTCTCAGGCCCAATCCCCGATTCCTTCTCCAACCTCACTCGGTTGACTCGACTCGTTTTATCGAAAAACTCCCTCACCGGAACTATACCCTCTTCCTTATCCTCCCTCTCTAACCTTCAAGAGCTTTACCTCGACAACAACAACCTCCAAGGACCAATCCCCCTCACTTTTAACCGCCTCACCAACCTTAAACGCCTCGAAATGCAGTCCAACAAGCTAAACGGTGTCCTTCCCAGTTTGAGCTCTCTGAACAATCTTTACTACTTGGACCTAAGTTTCAATCTTTTCACCGGAGGGTTCCCCTCCGCCCTGCCGGAATCTCTGGTCCAGATTTCAATGCGGAACAACAGCTTAAGTGGCGCGTTGGAACCCGAATCTCTGAGGAACTTGAACTACTTGGAAGTAGTGGATTTGACTGCCAACAGGTTAAACGGTGTCGTTCCGTTTGCGCTATTCGAGCTTCCCTCGTTGCAGCAGGTGGCGCTCTCTTTCAACGAGTTCTCGCACCTGGAAGCGCCTTACGCTTTGGAAATGCAAAGCGGAGTTATAGCGGTTGATCTGAGCAACAACGAGCTTGGGGGGTTTCTGCCGTTGTTCCCGGCGTTGATGCCGAGGCTTTCGTCTCTGTCGTTTGAGAACAATAAGTTCGTAGGAATGATTCCGATCCAGTACGCGTTGAAGACAGTTTTCCCCGAGGCTGGGATAGCTCCGTTCGAGAGGCTTCTGTTGGGGGGAAACTACTTGTTTGGAGCTATTCCGAGTCCTCTAATGGCGCTTCAACCGGGTTCTGCCATGGTGAGGCTTGTTGATAATTGCTTGTATAGGTGTCCTATCAGTTTCTTCTTTTGTCAGGGAGCTCAACAAAAGTCATTTGAAGAATGTAAGAGATTTAGCCGCTTCATTCCCTAG 1275 0.5067 MLSLTLTSSHFHLLLTLSLFLTSFVTDSATHWSDTQLLKELKNNLHPASITPGSCIFSWDFSYDPCDNLFTDKFTCGFRCDAVVSGTTRLTELTLDPAGYSGTLSATWNLPYLQTLDVSNNFFSGPIPDSFSNLTRLTRLVLSKNSLTGTIPSSLSSLSNLQELYLDNNNLQGPIPLTFNRLTNLKRLEMQSNKLNGVLPSLSSLNNLYYLDLSFNLFTGGFPSALPESLVQISMRNNSLSGALEPESLRNLNYLEVVDLTANRLNGVVPFALFELPSLQQVALSFNEFSHLEAPYALEMQSGVIAVDLSNNELGGFLPLFPALMPRLSSLSFENNKFVGMIPIQYALKTVFPEAGIAPFERLLLGGNYLFGAIPSPLMALQPGSAMVRLVDNCLYRCPISFFFCQGAQQKSFEECKRFSRFIP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0106 424 Pfam Leucine rich repeat 111 171 IPR001611 GO:0005515
Vra7g0106 424 SUPERFAMILY L domain-like 80 349 - -
Vra7g0106 424 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 8 421 - -
Vra7g0106 424 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 8 421 - -
Vra7g0106 424 SMART LRR_typ_2 110 133 IPR003591 -
Vra7g0106 424 SMART LRR_typ_2 158 181 IPR003591 -
Vra7g0106 424 SMART LRR_typ_2 182 205 IPR003591 -
Vra7g0106 424 SMART LRR_typ_2 134 157 IPR003591 -
Vra7g0106 424 SMART LRR_typ_2 276 300 IPR003591 -
Vra7g0106 424 Gene3D Ribonuclease Inhibitor 33 200 IPR032675 -
Vra7g0106 424 Gene3D Ribonuclease Inhibitor 201 424 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0106 Vra-Chr7 1997828 1999400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0106 90 395 Receptor kinase-like Gene Family AT1G17750 31.818 9.60e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0106 - - gmx:100787530 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0748 11 6051593 6053212 Vra7g0106 7 1997828 1999400 PCT