Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0748 ATGGGATCTCTCTGTACGATCTTCTCAATTTGGTTTCTAGTATTACTGGGTGCTGAATCAAAGACGCATTGGGAAGATGCAGAGGTTCTGAAGGAGCTAAAGCGAGGTTTGGAACCAGCTTCAGTCATCCCAGGCTCTTGCATCAGTTCCTGGGACTTCGCCGTCGACCCCTGCGACAACCTATTCGGCCAGAAATTCACGTGCGGCTTCAGATGCGACCTTGTCGTTTCCGGCCTCAGTCGAGTCACGGAACTTGCGCTCGACCAAGCGGGTTATGTTGGCTCTCTCACCTTCACGTGGAACCTTCCCTTTCTACAAACACTCGATCTCTCCAAGAACCAATTCTCCGCTCAAATTCCCGATTCCTTTTCGAACCTAACTCGCCTCCGCCGACTCAGTCTCTCGTCGAACTCCTTCTCCGGCGAGATACCCTCTTCCCTCGGCACACTCCCCACTCTCGAAGAGCTTTACCTCGACAACAACAACCTAACAGGAGCAATCCCTCAAGGCTTCCACAACCTTATAAGACTCGAACTCCAGTCCAACAAACTCAACACCTATCCATCCAACTTGGACTCCTTCACAAACCTTAAATACCTCGATCTCAGCGATAACTCCATCGCCGGAGTGTTGCCGGCCTCGCTCCCTGTTTCGCTGGTCCAGATATCCATTCGGAACAACAATTTAAGTGGTGTCTTGTCGAGTGAAAGCTTCAGGAATTTAACGAGGTTGCAGGTGGTGGATTTCAGCTCCAACCGAATCAGCGGTTCCATTCCTTCGGTTTTCTTCGAGCTTCCGTCGTTGCAGCAGTTGACGCTGTCCTTCAACGAGTTCACGAAGGTTGAAGCACCTTATAAGGGAGTGGAGTCCCGGAGCGGGCTTATCGCGGTTGAATTAAGCAACAACAAGCTGGAGGGGTTTTTGCCGTCGTTCATGGCGATGATGCCGAAGTTATCGTCGTTGTCGTTGGAGAATAACCAGTTCAGAGGGCGAATAGCGACCCAGTTTGCAGTGAAAACGGTGTCTCCCCAAACGGGAGTGTCTGAGTTGGGGAGGCTTCTGTTGGGGGGGAATTACTTAGTAGGAGGGATTCCTCGACCCTTGTTGACGCTGAAACGCGATTCTGCGAACGTGAGTTTAGTTGATAACTGCTTGTACAGGTGCCCTCACAGTTTCTTCTTCTGCCAAGGTGGACAACAGAAGTCATTGACACAGTGTAACAGATTTGTCTCAACCAGTCAATAA 1245 0.506 MGSLCTIFSIWFLVLLGAESKTHWEDAEVLKELKRGLEPASVIPGSCISSWDFAVDPCDNLFGQKFTCGFRCDLVVSGLSRVTELALDQAGYVGSLTFTWNLPFLQTLDLSKNQFSAQIPDSFSNLTRLRRLSLSSNSFSGEIPSSLGTLPTLEELYLDNNNLTGAIPQGFHNLIRLELQSNKLNTYPSNLDSFTNLKYLDLSDNSIAGVLPASLPVSLVQISIRNNNLSGVLSSESFRNLTRLQVVDFSSNRISGSIPSVFFELPSLQQLTLSFNEFTKVEAPYKGVESRSGLIAVELSNNKLEGFLPSFMAMMPKLSSLSLENNQFRGRIATQFAVKTVSPQTGVSELGRLLLGGNYLVGGIPRPLLTLKRDSANVSLVDNCLYRCPHSFFFCQGGQQKSLTQCNRFVSTSQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0748 414 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 410 - -
Vra11g0748 414 Gene3D Ribonuclease Inhibitor 23 281 IPR032675 -
Vra11g0748 414 Pfam Leucine rich repeat 219 277 IPR001611 GO:0005515
Vra11g0748 414 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Vra11g0748 414 SMART LRR_typ_2 126 148 IPR003591 -
Vra11g0748 414 SMART LRR_typ_2 150 173 IPR003591 -
Vra11g0748 414 SMART LRR_typ_2 265 286 IPR003591 -
Vra11g0748 414 SMART LRR_typ_2 241 264 IPR003591 -
Vra11g0748 414 SMART LRR_typ_2 102 125 IPR003591 -
Vra11g0748 414 SMART LRR_typ_2 194 217 IPR003591 -
Vra11g0748 414 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 410 - -
Vra11g0748 414 Pfam Leucine Rich Repeat 196 215 IPR001611 GO:0005515
Vra11g0748 414 Gene3D Ribonuclease Inhibitor 286 386 IPR032675 -
Vra11g0748 414 SUPERFAMILY L domain-like 41 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0748 Vra-Chr11 6051593 6053212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0748 43 369 Receptor kinase-like Gene Family AT3G11080 27.546 3.64e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0748 - - gmx:100811366 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0748 11 6051593 6053212 Vra11g0748 11 6051593 6053212 ECH
Vra11g0748 11 6051593 6053212 Vra7g0106 7 1997828 1999400 PCT