LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g0050	ATGTGGCGGTGCGTGGCTCGTGCAAATCACCAATCACTGAGATCTTACGCGTCAAGATTTTTCTCTAGTGGTGGAAACTCCTCCTACAACGTGGTCGATCACAAGTACGATGCGGTTGTCGTGGGTGCTGGGGGTGCAGGGTTGAGAGCCGCCATTGGACTTTCCGAACATGGCTTCAACACTGCTTGCATCACGAAGCTCTTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTAATTGAACTTGAAAATTATGGACTGCCATTTTCAAGAACTGAAGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCTGATCGAACTGGACATGCTTTGTTGCACACTCTCTACGGCCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCACTAGATCTATTAATGAACAGTGATGGTAGTTGCCAAGGAGTGATTGCCTTGAATATGGAAGATGGAACATTACATCGTTTCCAAGCAGCTTCAACAATTTTGGCCACGGGGGGCTATGGTAGAGCTTATTTTTCTGCCACCTCAGCACATACATGTACTGGAGATGGCAATGCCATGGCTGCACGGGCTGGGGTCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCTACAGGCATATATGGAGCGGGCTGCCTTATCACGGAAGGTTCTCGTGGTGAAGGTGGGATTCTTAGGAACAGTGAGGGTGAGAGGTTTATGGAACGTTATGCTCCTACTGCAAAGGATCTCGCATCAAGAGATGTCGTTTCCAGATCAATGACTATGGAAATCCGGGAAGGCCGTGGTGTAGGACCCCATAAAGATCACATCTATCTACACCTGAATCACTTACCCCCAGAAGTTCTCAAGGAGAGACTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAGCCTATTCCTGTTTTGCCAACAGTGCATTATAACATGGGTGGTATTCCAACGAATCATCATGGAGAGGTGGTTACTATCAAAGGTAATGATCCAGATGCTGTAGTTCCTGGATTAATGGCTGCTGGGGAAACAGCCTGTGCTTCAGTTCATGGTGCCAACAGGCTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCGTAGACCAGGAGATAAACAAAAGCCTTTAGAGAAAGATGCTGGTATGAAAACAATTGCTTGGCTGGACAAATTGAGAAATTCAAATGGATCATTGCCAACTTCCAAAATTCGGTTGGATATGCAAAGAGTAATGCAAAACAATGCTGCTGTGTTCCGTACCCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCATGATGTCAAGTTGGAGGATCGAGGTTTGATATGGAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTTTGATTAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTTACGAAAAGAGACGATGAAAACTGGATGAAACACACTTTGGGATATTGGGAGAATGAGAAGGTCCGGTTAGATTACAGGCCAGTGCACATGAACACGTTGGACAATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAA	1863	0.4503	MWRCVARANHQSLRSYASRFFSSGGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGVPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIRRPGDKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLDMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKLEDRGLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDNEVESFPPKARVY*	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g0050	620	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	265	383	IPR027477	-
	Vra7g0050	620	Gene3D	succinate dehydrogenase protein domain	571	620	-	-
	Vra7g0050	620	Pfam	FAD binding domain	37	433	IPR003953	-
	Vra7g0050	620	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	275	378	IPR027477	-
	Vra7g0050	620	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	479	620	IPR037099	GO:0016491
	Vra7g0050	620	Gene3D	-	460	570	-	-
	Vra7g0050	620	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	13	620	-	-
	Vra7g0050	620	SUPERFAMILY	FAD/NAD(P)-binding domain	30	456	IPR036188	-
	Vra7g0050	620	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	34	620	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Vra7g0050	620	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	37	620	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Vra7g0050	620	Pfam	Fumarate reductase flavoprotein C-term	489	620	IPR015939	GO:0016491
	Vra7g0050	620	Gene3D	-	37	444	IPR036188	-
	Vra7g0050	620	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	71	80	IPR003952	GO:0016491
	Vra7g0050	620	PIRSF	SDHA_APRA_LASPO	26	609	-	-
	Vra7g0050	620	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	13	620	IPR030664	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g0050	Vra-Chr7	1179986	1187359	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g0050	K00234		-	gmx:100802169	1194.87

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra11g0684	11	5510712	5518810	Vra7g0050	7	1179986	1187359	PCT