Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0684 ATGTGGCGGTGCATCGCACGGGGGCTTCGTGGGGCTGCCTCTACCACCAGATCCACCTCTAGTCACCCTCTCGGATCTCACCTTTGTAGATTCTTCTCCAGTGGGGTTAACTCCTCGTATACCGTGGTGGATCATACTTATGATGCTGTTGTCGTAGGTGCGGGTGGCGCGGGATTGAGAGCTGCTATTGGACTTTCAGAACACGGGTTCAAGACTGCTTGTATCACCAAGCTCTTCCCCACTCGTTCGCACACGGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAACATGACAGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGTGATCAGGATGCCATACAGTATATGTGCAGGGAAGCACCAAAAGCAGTCATCGAGCTAGAGAACTATGGTTTACCATTTTCCCGAACGGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTGAACTATGGGAAAGGAGGTCAAGCATACCGCTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGTCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTCTTAATGAATAATGATGGCACCTGCCAGGGAGTAATTGCCTTGAATATGGAGGATGGAACACTACATCGTTTCCAAGCTGCCTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACACACATGTACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCTCTTGAGGATTTGGAGTTTGTACAATTTCACCCAACTGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGCTCTCGTGGTGAAGGTGGAATTCTCAGGAACAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCGAGATCAATGACAATGGAGATCAGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCATTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACAGTACATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATTCAGTGATTCCTGGATTGATGGCCGCCGGGGAAACAGCCTGTGCATCAGTCCATGGTGCCAATAGGCTTGGTGCAAATTCTCTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAGACCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTCAGAGAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAGTTATGCAAAGCAATGCTGCTGTGTTCCGTACACAGGAAACGTTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGCTTCCATGATGTTAAGGTCAAGGACCGCAGTTTAATATGGAACTCCGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCTTGCATCACAATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAACTGGATGAAACACACTGTGGGATACTGGGAGAACGAGAAGGTCCGGTTAGACTACAGGCCAGTGCATTTAAATACATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGTGTCTATTGA 1896 0.4578 MWRCIARGLRGAASTTRSTSSHPLGSHLCRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNNDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDSVIPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGQRTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFHDVKVKDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDENWMKHTVGYWENEKVRLDYRPVHLNTLDDEVESFPPKARVY* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0684 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 276 394 IPR027477 -
Vra11g0684 631 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 48 631 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vra11g0684 631 SUPERFAMILY FAD/NAD(P)-binding domain 40 467 IPR036188 -
Vra11g0684 631 Pfam FAD binding domain 48 444 IPR003953 -
Vra11g0684 631 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Vra11g0684 631 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 286 389 IPR027477 -
Vra11g0684 631 PIRSF SDHA_APRA_LASPO 37 620 - -
Vra11g0684 631 Gene3D - 471 582 - -
Vra11g0684 631 Gene3D - 48 455 IPR036188 -
Vra11g0684 631 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 45 631 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vra11g0684 631 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 631 - -
Vra11g0684 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 490 631 IPR037099 GO:0016491
Vra11g0684 631 Gene3D succinate dehydrogenase protein domain 583 631 - -
Vra11g0684 631 Pfam Fumarate reductase flavoprotein C-term 500 631 IPR015939 GO:0016491
Vra11g0684 631 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 631 IPR030664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0684 Vra-Chr11 5510712 5518810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0684 K00234 - gmx:100803020 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0684 11 5510712 5518810 Vra11g0684 11 5510712 5518810 ECH
Vra11g0684 11 5510712 5518810 Vra7g0050 7 1179986 1187359 PCT