Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0035 ATGAGTGCCGTTAATTTTAACGCATGGCTACACCCCAGCTTCACCAGATCCAGATCCCCAACTTTTCTATTTCACGGCCTCACTAACTCCCCCATTCCTTCCTTCATCGTCACCAAACGCCAAAGAGATAAGCTTTATTCCTCCTCGCCTTTCACTCTCTCCGCACTCCTCACCAAAGAGGACACTGTTGAGACCCAAGAGAAGCCGGCGTTTAACTTCAAGTCCTACATGGTCCAGAAAGCCGACGCCGTCAATCAGGCGCTTGATGACGCCGTTCCCCTCCGCGAGCCGCTGCGGATCCACGAGGCCATGCGCTACTCCCTCCTCGCCGGTGGCAAGCGCGTACGCCCCGTCCTCTGCGTCGCCGCCTGCGAGCTCGTCGGAGGAGCCGCCGCCACCGCGATGCCCGCTGCCTGCGCCGTCGAGATGATCCACACCATGTCCCTCATCCACGATGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGTAAACCTACCAACCACAAGGTCTTCGGGGAGGACGTCGCTGTCCTCGCCGGCGACGCGCTCCTCGCATTTGCCTTCGAGCACATCGCCGGGGCCACCGTCGGTGCCTCCCCGCCTCGCATCGTCCGCGCCCTCGGGGAGCTCGCACGAGCCATCGGCGCCGAGGGACTCGTCGCCGGCCAGGTGGTCGACATCAAATCCGAGGGGCTTGACGACGTTGGCCTCGAACGCTTGGAGTTCATCCATCTCCACAAGACGGCGGCCCTGCTGGAAGGCGCGGTGGTCCTTGGCGCCATCCTGGGCGGTGGAACCGACGAGGAGATTGAGAAATTGAGGAAGTTTGCGAGGTATATAGGATTGTTGTTTCAGGTGGTTGATGACATTCTGGATATTACGAAGTCTTCCCAGGAATTGGGGAAAACTGCGGGGAAGGATCTTGCGGCTGATAAGGTTACTTATCCCAAGCTTTTGGGGATTGAGAAGTCTAAGGAGTTTGCTGCCAAATTGAACAAAGATGCTCAGGATCAGCTTTCTGGCTTTGACCCTGTCAAGGCTGCTCCTTTAGTTGCTTTAGCCAATTACATTGCTTATAGGCAGAACTAG 1095 0.579 MSAVNFNAWLHPSFTRSRSPTFLFHGLTNSPIPSFIVTKRQRDKLYSSSPFTLSALLTKEDTVETQEKPAFNFKSYMVQKADAVNQALDDAVPLREPLRIHEAMRYSLLAGGKRVRPVLCVAACELVGGAAATAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAGATVGASPPRIVRALGELARAIGAEGLVAGQVVDIKSEGLDDVGLERLEFIHLHKTAALLEGAVVLGAILGGGTDEEIEKLRKFARYIGLLFQVVDDILDITKSSQELGKTAGKDLAADKVTYPKLLGIEKSKEFAAKLNKDAQDQLSGFDPVKAAPLVALANYIAYRQN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0035 364 SUPERFAMILY Terpenoid synthases 73 344 IPR008949 -
Vra7g0035 364 CDD Trans_IPPS_HT 96 362 IPR000092 GO:0008299
Vra7g0035 364 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 24 364 - -
Vra7g0035 364 SFLD Polyprenyl Transferase Like 76 362 - -
Vra7g0035 364 SFLD Isoprenoid Synthase Type I 76 362 - -
Vra7g0035 364 ProSitePatterns Polyprenyl synthases signature 1. 149 165 IPR033749 -
Vra7g0035 364 ProSitePatterns Polyprenyl synthases signature 2. 282 294 IPR033749 -
Vra7g0035 364 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 24 364 - -
Vra7g0035 364 Pfam Polyprenyl synthetase 100 334 IPR000092 GO:0008299
Vra7g0035 364 Gene3D Farnesyl Diphosphate Synthase 65 364 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0035 Vra-Chr7 946323 947787 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0035 K13789 - gmx:100785539 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0651 11 5212211 5213519 Vra7g0035 7 946323 947787 PCT