Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1733 ATGGAACGTGCTCGCAGGCTTGCGAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCAAAGCAGCACCAGAAGAATGAATCCTTACTGCACTCTTCCACCACCCCCATGTTGCTGTACTCTTCCTCTAGGTGCATGTCCTCTGTTTCCTCCGCTGCAGTGAGAAACAGAGGATCCAAAACAGAGACCCTTCTTGGAAGGAGCATGAACATCGCCACCATGTCACGCGGCGTTGTTGGTGGCCTCCTTGGTGTTGGTTCAACCCGATCCATCTCTGTTGAAGCGCTTCAACGGAGTGACACTTTCCCCAGGCGCCATAACTCTGCCACCCCAGAGGAACAGAGCAAGATGGCAGAGTCAATTGGCTTTGAGAGCCTCGATTCTCTGGTGGACGCCACCGTTCCTAAGTCGATCCGCTTGAAGGAGATGAAGTTCAGTAAGTTCGACGGAGGTTTGACAGAGAGCCAGATGATTGAGCACATGAAGGATTTGGCCTCAAAGAACAAGGTTTTCAAGTCCTACATTGGGATGGGGTACTACAACACTCATGTTCCACCAGTGATCTTGAGGAACATAATGGAGAACCCTGCTTGGTACACTCAGTACACTCCTTACCAGGCTGAGATATCTCAGGGGAGGCTTGAGTCACTGCTGAATTACCAGACCCTGATTACTGACCTCACTGGCTTGCCCATGTCCAATGCGTCATTGCTTGACGAGGGCACTGCTGCAGCTGAGGCAATGTCCATGTGCAATAACATTCAAAAGGGGAAGAAGAAGACCTTCATCATCGCAAGCAACTGCCACCCTCAGACCATTGATATTTGCAAGACAAGGGCTGCTGGATTTGATCTCAAGGTTGTGACGGCAGATCTTAAGGATATTGATTACAAATCTGGGGATGTGTGTGGTGTGCTAGTGCAGTACCCTGGGACTGAGGGTGAGGTGTTGGACTATGGGGAGTTCATCAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTTATGGCAAGTGATCTGTTGGCACTGACTGTGTTGAAGCCTCCTGGGGAGTTGGGGGCAGATATTGTTGTTGGATCAGCTCAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCACAAGAGTACAAGAGGATGATGCCAGGAAGAATCATTGGAGTCAGTGTTGATTCTACAGGAAAGACTGCTCTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCCCAGGCACTTCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAGAACATTGCAAACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAAGACCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCCAATGCACATGCAATTGCTGATGCAGCTATCAAAAGTGAAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTGTTCAAAGTCTTTGCTGGTGGAAAGCCAGTCCCCTTCACAGCTGCATCTATTGCACCAGAAGTGAAAAGTGCAATTCCTTCTGGATTAACTAGGAATAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAGGCTACAAGCAAAAGATCTCTCACTATGCCACAGTATGATTCCATTGGGATCCTGTACAATGAAGCTGAATGCAACGACAGAAATGATGCCTGTGACATGGCCCAGCTTTAGTGATATTCACCCTTTTGCACCAGTTAACCAGGCTGAAGGTTATCAGGAAATGTTCAACAATTTGGGTGACTTGTTGTGTACCATCACCGGGTTTGACTCCTTCTCCTTGCAACCAAATGCCGGTGCTGCTGGAGAATATGCTGGACTTATGGTTATCCGTGCATATCATCTGGCAAGAGGTGACCATCACCGCGATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGCGCTGCAATGTGTGGAATGAAAATCGTCTCAGTTGGAACTGATGCCAAGGGAAACATTAATATAGAAGAGTTGAGGAAGGCTGCTGAAAAACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAGGAAGGTATTGATGAGATCTGCCAGATCATTCATGATAATGGTGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGGCTCACAAGCCCAGGTTGGATAGGAGCAGATGTTTGTCATCTCAATCTCCACAAGACATTCTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCCCACCCTGTGATATCAACTGGTGGAATTCCTGCCCCTGAAAATCCTCAACCACTTGGTACCATCTCTGCTGCACCATGGGGATCAGCACTCATATTGCCAATCTCTTACACTTACATCGCTATGATGGGTTCTAAAGGACTCACTGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAACGATTGGAGAACTATTACCCAGTTCTTTTCCGGGGAGTCAATGGAACAGTTGCTCATGAGTTCATTATTGACTTGAGAGGCTTCAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAACGCCTCATGGACTATGGTTTTCATGCACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCTACAGAGAGTGAAAGCAAGGCCGAGTTGGACAGGTTCTGTGATACTCTTATTTCAATTAGAGAAGAAATTGCTGAAATAGAGAAAGGAAAGGCTGACATAAACAACAATGTGCTTAAGGGAGCTCCTCATCCACCATCATTGCTCATGGCTGATGCATGGACAAAACCATACTCAAGGGAATATGCAGCCTTCCCAGCTCCGTGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGGACGTGTTGATAATGTGTATGGTGACCGCAACCTCATTTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAAGAAGCTGCAGCCACAGCCTAG 3189 0.4722 MERARRLANRAILKRLVSEAKQHQKNESLLHSSTTPMLLYSSSRCMSSVSSAAVRNRGSKTETLLGRSMNIATMSRGVVGGLLGVGSTRSISVEALQRSDTFPRRHNSATPEEQSKMAESIGFESLDSLVDATVPKSIRLKEMKFSKFDGGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTLITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRAAGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSTGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIANRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAAIKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVPFTAASIAPEVKSAIPSGLTRNSPYLTHPIFNTYQTEHELLRYLYRLQAKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFSDIHPFAPVNQAEGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRDVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAEKHKDNLSALMVTYPSTHGVYEEGIDEICQIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVISTGGIPAPENPQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDTLISIREEIAEIEKGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTGRVDNVYGDRNLICTLLPASQAVEEEAAATA* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1733 1062 SUPERFAMILY PLP-dependent transferases 105 532 IPR015424 -
Vra6g1733 1062 Gene3D Aspartate Aminotransferase, domain 1 861 1000 IPR015422 GO:0003824
Vra6g1733 1062 Coils Coil 721 741 - -
Vra6g1733 1062 Pfam Glycine cleavage system P-protein 105 531 IPR020581 GO:0004375|GO:0006546
Vra6g1733 1062 Pfam Glycine cleavage system P-protein 549 824 IPR020581 GO:0004375|GO:0006546
Vra6g1733 1062 Gene3D - 614 840 IPR015421 GO:0003824
Vra6g1733 1062 Gene3D - 185 445 IPR015421 GO:0003824
Vra6g1733 1062 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1062 - -
Vra6g1733 1062 CDD GDC-P 574 969 IPR020581 GO:0004375|GO:0006546
Vra6g1733 1062 Gene3D Aspartate Aminotransferase, domain 1 174 527 IPR015422 GO:0003824
Vra6g1733 1062 SUPERFAMILY PLP-dependent transferases 566 1047 IPR015424 -
Vra6g1733 1062 CDD GDC-P 154 531 IPR020581 GO:0004375|GO:0006546
Vra6g1733 1062 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 96 1053 IPR003437 GO:0004375|GO:0006544
Vra6g1733 1062 TIGRFAM gcvP: glycine dehydrogenase 105 1046 IPR003437 GO:0004375|GO:0006544
Vra6g1733 1062 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1062 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1733 Vra-Chr6 33577272 33583935 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1733 K00281 - gmx:100777528 2000.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1733 6 33577272 33583935 Vra5g1397 5 20708106 20713176 PCT