Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1397 ATGGAACGTGCACGGAGGCTAGCAAATAGGGCAATTCTAAAGAGGCTGGTTTCTTCGACGAAGGATCATTCCCATTCACGGCGTCTGTCATATGTTTCTCTTTCCTTTGCAAGAACCAAACAAGAAAATTTGATCGGAAACAACAGACACCATGCAAGCAATGTAACATCTCGATCCATTTCAGTGGAGGCACTCAAGCCCAGCGACAGGCTCCCTCGACGTCACAACTCTGCCACATCAGATGAGCTAACCAAAATGGCCCAGACATGCGGCTTCGACAACGTCAACTCCCTCATCGACGCCACCATTCCCAAATCCATCCGTCGGAAAGAAATGTCGTTCAACACCTTCGATGAGGGACTCACAGAGTCCGAAATGATGTTGCACATGAGGAGCTTGGAATCAAAGAACAAATGCTTCAAGTCCTACATCGGGATGGGGTACTACAACACGCACGTGCCACCCGTGATCTTGCGCAACATCATGGAGAACCCCGCGTGGTACACTCAGTATACTCCCTACCAGGCTGAGATCTCTCAGGGTCGTCTCGAGTCCCTCATGAATTACCAAACCATGGTCGCAGATCTCACCGCTCTTCCAATGTCCAACTCTTCGTTGCTCGATGAAGGAACTGCGGCTGCTGAAGCAATGTCGATGTGTAACAACATTCACAGGGGGAAGAGGAAGACCTTTGCCATAGCCAATAACTGTCACCCTCAAACTATTGATATTTGCATGACTAGAGCAACTGGTTTCGGGATTAAAGTTGTTGTTGTGGATGTTAACGATGTGGATTACGGATCCGGTGATGTTTGTGGAGTTCTTGTTCAGTATCCGGGGACTGAGGGTGAGGTTTTGGACTATGGGGAGTTTGTTAAGGAGGCTCATTCACATGGAGTTAAGGTTGTTATGGCGTCTGATTTGTTGGCTCTAACTATGTTGAAGCCTCCTGGGGAATTTGGGGTGGACATTGTTGTTGGGTCAACTCAGAGGTTTGGTGTTCCAATGGGTTATGGGGGTCCACATGCTGCGTTCCTTGCCACATCACAAGAGTATAAAAGGTTGGCACCTGGAAGGATCATTGGTCTCAGTGTTGATTCTTGTGGAAAGTCGGCTTTGAGAATGGCCTTGCAAACTAGGGAGCAGCATATCCGCAGAGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCATTGCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGACTTAAAACCATTGCCCAACGAGTTCATGGCCTTGCTGGGGTCTTTGCCCTGGGATTGAAGAAACTTGGTACCGTGGAAGTTCAGGACCATCCCTTCTTTGATACTGTGAAAATTAAGACCACCAATGCTCAAGAAATTGCTGATGTTGCTCACAAAAATGAAATAAATTTGCGTGTGGTTGATGGGAACACAATCACTGTTGCCTTTGATGAAACAACAACCTTGGAGGATGTTGATAACCTTTTCAAAGTTTTTTCTAATGGCAAGCGTGTATCCTTCACAGCTACCTCCCTTGCACCAGAAGTTCAGATTGCAATTCCTTCAGGACTAATTAGGAAGAGTCCTTATCTAACACACCCTATCTTTAACATGTACCACACTGAGCATGAAATGCTCAGATACATTCATAGGCTACAATCGAAAGATCTTTCATTGTGCCATAGTATGATCCCATTGGGATCTTGTACAATGAAATTGAATGCAACCACTGAAATGATGCCTGTGACATGGCCTAACTTTGCTAACATTCACCCTTTTGCACCAATCGAACAGGCTCAAGGTTATCAGGAAATGTTCAAAAATTTGGGTAGCTTGTTGTGTGCAATCACTGGGTTTGACTCTTTCTCCTTGCAACCTAATGCGGGTGCGGCTGGAGAATACGCTGGATTGATGGTTATTCGGGCATATCATTTGGCAAGAGGAGACCACCACCGCAATATTTGCATTATACCAGTGTCTGCACACGGTACGAATCCTGCCAGTGCTGCTATGTGTGGAATGAAAATTGTATCGATCGGAACTGATTCCAAGGGAAACATCAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGAACAACTTATCTACACTTATGGTAACATATCCTTCAACTCACGGTGTTTACGAAGAAGGTATTGATGAGATATGCAAGATTATTCATGATAACGGAGGACAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGTGGCATTCCTGCTCCTGACAAGAGACAACCGGTTGGTACCATCTCTGCAGCACCATGGGGCTCAGCTCTGATATTGCCTATCTCATACTCTTACATAGCCATGATGGGTTCTAAAGGACTCACCGAAGCGTCAAAAACAGCAATTTTGAAGGCAAACTATATGGCAAAACGATTGGAGACTCATTACCCTGTTCTTTACCGTGGAACGAATGGAACTGTTGCTCATGAATTCATCATTGACTTAAGAGGCTTTAAGAACACTACTGGGATAGAACCTGAGGATGTTGCAAAGCGGCTTATAGACTATGGCTTCCATGGACCCACAATGTCATTTCCTGTGTCTGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGGCAAGAAATTGCTGAGATTGAGAATGGAAAGGCTGACAAGAACAACAATGTACTGAAGGGTGCCCCTCACCCACCATCACTGCTCATGGCAGATGCATGGACAAAACCTTACTCTCGAGAATATGCAGCCTTCCCAGCTTCCTGGCTTCGTTTTTCCAAGTTCTGGCCTTCCACTGGACGTATTGATAATGTGTACGGTGACCGGAACTTGGTTTGCACCCTTCCCCCAGAATCAAAGGTTGCTGAAGAACGAGCTACCACAACAACGTAA 3096 0.4587 MERARRLANRAILKRLVSSTKDHSHSRRLSYVSLSFARTKQENLIGNNRHHASNVTSRSISVEALKPSDRLPRRHNSATSDELTKMAQTCGFDNVNSLIDATIPKSIRRKEMSFNTFDEGLTESEMMLHMRSLESKNKCFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLMNYQTMVADLTALPMSNSSLLDEGTAAAEAMSMCNNIHRGKRKTFAIANNCHPQTIDICMTRATGFGIKVVVVDVNDVDYGSGDVCGVLVQYPGTEGEVLDYGEFVKEAHSHGVKVVMASDLLALTMLKPPGEFGVDIVVGSTQRFGVPMGYGGPHAAFLATSQEYKRLAPGRIIGLSVDSCGKSALRMALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVQDHPFFDTVKIKTTNAQEIADVAHKNEINLRVVDGNTITVAFDETTTLEDVDNLFKVFSNGKRVSFTATSLAPEVQIAIPSGLIRKSPYLTHPIFNMYHTEHEMLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPNFANIHPFAPIEQAQGYQEMFKNLGSLLCAITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNICIIPVSAHGTNPASAAMCGMKIVSIGTDSKGNINIEELRKAAETHKNNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKRQPVGTISAAPWGSALILPISYSYIAMMGSKGLTEASKTAILKANYMAKRLETHYPVLYRGTNGTVAHEFIIDLRGFKNTTGIEPEDVAKRLIDYGFHGPTMSFPVSGTLMIEPTESESKAELDRFCDALISIRQEIAEIENGKADKNNNVLKGAPHPPSLLMADAWTKPYSREYAAFPASWLRFSKFWPSTGRIDNVYGDRNLVCTLPPESKVAEERATTTT* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1397 1031 Gene3D - 582 833 IPR015421 GO:0003824
Vra5g1397 1031 Gene3D - 154 414 IPR015421 GO:0003824
Vra5g1397 1031 TIGRFAM gcvP: glycine dehydrogenase 74 1015 IPR003437 GO:0004375|GO:0006544
Vra5g1397 1031 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 65 1022 IPR003437 GO:0004375|GO:0006544
Vra5g1397 1031 CDD GDC-P 543 938 IPR020581 GO:0004375|GO:0006546
Vra5g1397 1031 Pfam Glycine cleavage system P-protein 520 793 IPR020581 GO:0004375|GO:0006546
Vra5g1397 1031 Pfam Glycine cleavage system P-protein 74 500 IPR020581 GO:0004375|GO:0006546
Vra5g1397 1031 SUPERFAMILY PLP-dependent transferases 74 499 IPR015424 -
Vra5g1397 1031 CDD GDC-P 123 500 IPR020581 GO:0004375|GO:0006546
Vra5g1397 1031 SUPERFAMILY PLP-dependent transferases 539 1018 IPR015424 -
Vra5g1397 1031 Gene3D Aspartate Aminotransferase, domain 1 834 969 IPR015422 GO:0003824
Vra5g1397 1031 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1028 - -
Vra5g1397 1031 Gene3D Aspartate Aminotransferase, domain 1 143 496 IPR015422 GO:0003824
Vra5g1397 1031 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1028 IPR020581 GO:0004375|GO:0006546
Vra5g1397 1031 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1397 Vra-Chr5 20708106 20713176 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1397 K00281 - gmx:100795673 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1733 6 33577272 33583935 Vra5g1397 5 20708106 20713176 PCT