Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1701 ATGGCTTCTCTCTCCGTTTCAATGGTTCTGCCACTCAGCTCCGCCAGCAAGAACAGGTCAAAGTCAAACCCTGCTCCCCCCGAAGCCTTCTTGAAGAGGAGTGCGGCGAAGAAATCGTCAGAGGCAGAACCAAAAAAGCTCAACATGGAAGCGTCTTTGAAGGAAAAAGCAGTGAAGGGTCTGAGCGCTGCTGCAGTAACATCGGGCATGGTGATTCCTGAAGTAGCTCATGCAGCGGGATACGACTTCTCTCCTTCGCTCCAAAACTTTCTGCTGAGTATTGCTGCTGGTGGGGTTGTGCTCGTGGCGATATTTGGTGCTGTTATAGGAGTCGCCAACTTTGATCCAGTTAAGAGAACTTGA 363 0.5069 MASLSVSMVLPLSSASKNRSKSNPAPPEAFLKRSAAKKSSEAEPKKLNMEASLKEKAVKGLSAAAVTSGMVIPEVAHAAGYDFSPSLQNFLLSIAAGGVVLVAIFGAVIGVANFDPVKRT* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1701 120 Gene3D Single helix bin 83 120 - -
Vra6g1701 120 MobiDBLite consensus disorder prediction 13 48 - -
Vra6g1701 120 MobiDBLite consensus disorder prediction 34 48 - -
Vra6g1701 120 Pfam Photosystem II reaction centre X protein (PsbX) 84 119 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vra6g1701 120 PANTHER OS07G0673550 PROTEIN 2 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1701 Vra-Chr6 33082903 33083505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1701 - - lang:109358190 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1701 6 33082903 33083505 Vra6g1701 6 33082903 33083505 ECH
Vra5g1358 5 20409537 20410187 Vra6g1701 6 33082903 33083505 ECH