Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1358 ATGGCTTCTGCTTCTGTTCCGGTGGCTTTGTCTCTGACCTCTGTCACGCACCGCAAGCCTTCATCCCAAGCCTTCTTCAGGCCATTGCCCTCACCACAACCAAAGAGAACCTTCTCAAAAAAGCCACCGTCAAACTCCAACCTTCAAATTAATGCATCTTTGAAGGAGAAGGCAGTGACAGGACTCACAGCCGCAACCTTCACAGCCTCTATGGTGATCCCAGAGGTGGCCAATGCTGCTGGATCCGATTTCTCCCCTTCTCTCAAGAACTTTCTACTCAGCATCTTCGCCGGTGGGATCGTGCTGGTAGCCATATTTGGAGCAGTTGTTGGAGTTGCCAACTTTGATCCGGTTAAGAGGACTTAA 366 0.5055 MASASVPVALSLTSVTHRKPSSQAFFRPLPSPQPKRTFSKKPPSNSNLQINASLKEKAVTGLTAATFTASMVIPEVANAAGSDFSPSLKNFLLSIFAGGIVLVAIFGAVVGVANFDPVKRT* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1358 121 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vra5g1358 121 MobiDBLite consensus disorder prediction 19 46 - -
Vra5g1358 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
Vra5g1358 121 Gene3D Single helix bin 84 121 - -
Vra5g1358 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1358 Vra-Chr5 20409537 20410187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1358 - - gmx:100305487 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1358 5 20409537 20410187 Vra5g1358 5 20409537 20410187 ECH
Vra5g1358 5 20409537 20410187 Vra6g1701 6 33082903 33083505 ECH