Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1674 ATGGCGTTTTGGAGGTCCTTGACGTTCTCCGCGATTCTTCTTCCACTCTTCATCCATGGCGCACTCTGCTTCTACCTCCCTGGCGTTGCTCCACAGGACTTCCAGAAGGGAGATCCATTGCAAGTAAAAGTAAACAAATTAACTTCAACGAAGACTCAGCTTCCATATACATACTATTCTCTTCCGTATTGTGCACCAGAGAAAATATTGGATAGCGCTGAAAATCTTGGAGAAGTGCTTCGTGGTGATCGCATTGAAAATTCTCGATATGTGTTTAAGATGCGTGAACCACAAATGTGCAATATTGTGTGTAAGCTTAAGCTTGATGCCAAAACTGCAAAAGAGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATGATCCTAGATAACCTTCCTCTAGTTGTTCCCATAAAACGGGTGGAACCGGACTCTACTGTATATCAACTTGGTTTCCATGTTGGACTCAAAGGGCAGTATACTGGGAGCAAGGAAGAGAAGCATTTTATTCACAACCATTTGTCTTTTACGGTCAAGTATCATAGAGATACACTTACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGCCTTTCAGTGTTAAACATGAATATGAAGGGAAGTGGGATGAACAGGCCACCCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTGAATTCGAACACTCCTCAAGAGGTCGAAGAGAACAAGGAAATTATCTTCACTTATGATGTTGAATTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTGATGAGTGATGACCAAATTCACTGGTTCTCAATTGTGAATTCATTGATGATTGTTCTCTTTCTCTCGGGTATGGTAGCAATGATAATGCTTCGTACACTTTACCGTGATATTTCAAAGTACAATGAATTAGAAACCCAAGAAGAAGCACAGGAAGAGACTGGTTGGAAGCTTGTCCACGGTGATGTTTTTAGGCCACCAAACAATCCAGATTTGCTATGTGTTTATGTTGGGACTGGTGTTCAGTTTTTTGGAATGATACTAGTAACGATGATGTTTGCTGTCCTGGGGTTCCTTTCTCCTTCAAACCGAGGTGGGCTAATGACGGTCATGCTCTTGCTTTGGGTTTTCATGGGAATTTTCGCTGGTTATGCCTCGGCTCGCTTATATAAAATGTTCAAAGGAGCAGAGTGGAAGAAAATTGCCCTCAAAACTGCAATCATGTTCCCTGGAATCGTTTCTGCCATTTTCTTTGTGTTAAATGCTCTGATATGGGGACAAAAATCGTCTGGAGCAGTGCCATTTGGAACAATGTTTGCCCTGATCTTTTTATGGTTTGGGATCTCGGTTCCACTTGTTTTTGTTGGTGCCTATGTTGGGTTTAGGAAGCCTGCGACTGAAAGTCCTGTGAAGACAAACAAAATCCCAAGGCAAATCCCTGAGCAGGCATGGTACATGAATCCGGTCTTCTCAATTCTGATCGGAGGAATACTTCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTCACTTCAATATGGTTGAATCAGTTCTACTACATCTTCGGCTTCCTCTTCTTGGTCTTTGTCATCCTCATTGTCACTTGTGCTGAAATAACAATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGGTCTTACCTTACATCTGGCTCATCTGCTCTTTATCTATTTCTTTATGCAACATTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTATCTGGGTTATTGTACTTCGGTTACATGCTTATAGCTTCCTATGCCTTCTTTGTTGTAACTGGATCCATCGGATTTTACGCATGCTTTTGGTTCACAAGGCTCATCTATTCCTCGGTCAAGATTGATTAG 1914 0.4211 MAFWRSLTFSAILLPLFIHGALCFYLPGVAPQDFQKGDPLQVKVNKLTSTKTQLPYTYYSLPYCAPEKILDSAENLGEVLRGDRIENSRYVFKMREPQMCNIVCKLKLDAKTAKEFKEKIDDEYRVNMILDNLPLVVPIKRVEPDSTVYQLGFHVGLKGQYTGSKEEKHFIHNHLSFTVKYHRDTLTESARIVGFEVKPFSVKHEYEGKWDEQATRLTTCDPHAKHTVVNSNTPQEVEENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPNNPDLLCVYVGTGVQFFGMILVTMMFAVLGFLSPSNRGGLMTVMLLLWVFMGIFAGYASARLYKMFKGAEWKKIALKTAIMFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGAYVGFRKPATESPVKTNKIPRQIPEQAWYMNPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGLLYFGYMLIASYAFFVVTGSIGFYACFWFTRLIYSSVKID* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1674 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 5 637 IPR004240 GO:0016021
Vra6g1674 637 Pfam Endomembrane protein 70 55 593 IPR004240 GO:0016021
Vra6g1674 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1674 Vra-Chr6 32781958 32786414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1674 11 637 Miscellaneous Gene Families AT5G10840 85.056 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1674 K17086 - gmx:100810506 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1674 6 32781958 32786414 Vra6g1674 6 32781958 32786414 ECH
Vra6g1674 6 32781958 32786414 Vra5g1303 5 19966737 19970788 PCT