Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1303 ATGGCGTTTTGGAGATCTCTCGCCTTCTCTGCGGTTCTTCTGCTTCTGATCCACGCCTCTCACTGCTTCTACCTCCCTGGCGTCGCACCACAGGACTTCCAGAAGGGAGATCAATTGCAAGTGAAAGTAAATAAATTAACGTCAACAAAGACCCAGCTTCCATATTCATATTATTCACTTCCTTATTGCGCCCCAGAAAAAATACAGGACAGTGCAGAAAATCTTGGAGAAGTGCTTCGTGGTGACCGCATTGAAAATTCTCTTTATGCGTTTAAAATGCGTGAGCCACAAATGTGCAATATTGTGTGTAATGTTAAACTTGATGCCAAAACTGCCAAGGAGTTCAAAGAAAAGATCAGTGACGAGTATAGGGTGAACATGATTCTTGATAACCTTCCCCTAGTTGTTCCCTTGAAACGAAATGATCAGGATTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGGCAGTACAGTGGGAGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGGCATTTACTGTCAAGTACCACAAAGACGTCCTAACTGAATCTGCTAGAATAGTGGGCTTTGAGGTTAAGCCATTCAGTGCTAAACATGAATACGAAGGTAAATGGGAAGGAAAAACAACTCGTTTAACAACCTGTGACCCTCATGCTAAAAGCACAGTTGTCAACTCCAACTCTCCCCAAGAGGTTGAAGAGGGCAAAGAAATTATCTTCACCTATGATGTTGAATTCCAGGAGAGTGATGTGAAGTGGGCATCAAGATGGGATGCCTATTTGCTAATGAATGATGATCAAATCCACTGGTTCTCAATTGTTAACTCATTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAATGATAATGCTGCGTACACTATACCGTGACATTGCAAAATATAACGAGCTTGAGACCCAAGAAGAAGCCCAGGAGGAGACTGGTTGGAAGCTTGTCCATGGTGATGTGTTTAGGCCCCCTACTAACTCAGATTTGCTGTGTGTTTATGTTGGAACTGGTGTTCAGTTTTTTGGCATGATGCTGGTAACTATGTTGTTTGCTGTCCTTGGATTTCTTTCACCTTCAAACCGAGGTGGGCTGATGACAGCCATGCTCTTGCTTTGGGTTTTCATGGGAATATTTGCCGGTTACTCATCAACTCGTTTGTACAAAATGTTCAAAGGATCGGAGTGGAAAAAAGTTGCCCTCAGAACTGCAACCATGTTCCCTGCCATTGTCTCTGCCATTTTCTTTGTTTTAAATGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCTCTGATCTTTTTATGGTTTGGGATCTCGGTTCCACTTGTTTTTGTGGGTAGCTATGTCGGATTCAAGAAGCCTGCGATTGAGAATCCTGTGAAAACGAACAAGATCCCTAGGCAGATCCCTGAGCAGGCTTGGTACATGAACCCAGTTTTCTCAGTTTTGATTGGTGGAATACTCCCGTTTGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTCACATCAATCTGGTTGAATCAGTTTTACTATATCTTTGGATTCCTCTTTTTGGTCTTCATCATCCTCATCGTGACTTGTGCGGAAATAACCATCGTGCTCTGCTACTTCCAGTTGTGTAGTGAGGATTACTTGTGGTGGTGGCGGTCATATCTTACCTCTGGTTCCTCTGCTCTTTACCTCTTTCTTTACGCAACTTTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTATCTGCGATATTTTACTTTGGGTACATGCTCATAGCTTCTTATGCATTTTTTGTGGTGACCGGTACAATCGGATTTTATGCATGCTTTTGGTTCACTAGGCTCATCTACTCCTCCGTCAAAATTGATTAG 1911 0.426 MAFWRSLAFSAVLLLLIHASHCFYLPGVAPQDFQKGDQLQVKVNKLTSTKTQLPYSYYSLPYCAPEKIQDSAENLGEVLRGDRIENSLYAFKMREPQMCNIVCNVKLDAKTAKEFKEKISDEYRVNMILDNLPLVVPLKRNDQDSTVYQLGFHVGLKGQYSGSKEEKYFIHNHLAFTVKYHKDVLTESARIVGFEVKPFSAKHEYEGKWEGKTTRLTTCDPHAKSTVVNSNSPQEVEEGKEIIFTYDVEFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMLFAVLGFLSPSNRGGLMTAMLLLWVFMGIFAGYSSTRLYKMFKGSEWKKVALRTATMFPAIVSAIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGSYVGFKKPAIENPVKTNKIPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1303 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 5 636 IPR004240 GO:0016021
Vra5g1303 636 SUPERFAMILY MFS general substrate transporter 275 460 IPR036259 -
Vra5g1303 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 636 - -
Vra5g1303 636 Pfam Endomembrane protein 70 54 592 IPR004240 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1303 Vra-Chr5 19966737 19970788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1303 8 636 Miscellaneous Gene Families AT5G10840 84.628 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1303 K17086 - gmx:100780976 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1303 5 19966737 19970788 Vra5g1303 5 19966737 19970788 ECH
Vra6g1674 6 32781958 32786414 Vra5g1303 5 19966737 19970788 PCT