Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1673 ATGAAGTTCATGAAGTTGGGTTCGAAGCCTGATGCTCTTCAAGCTGACGGAAAATCTGTTAGGTATATATCATCTGAATTGGCTACAGATATTCTCATAACTGTTGGTGAGGTGAAGTTTCACCTGCACAAGTTCCCTCTATTGTCCAAGAGTAATCGGTTACAAAAGTTGCTGACAAAGGCTAATGAAGAGTGTTCTGATGAAATTCAATTGGATGATTTTCCTGGTGGTTCCAAGGCCTTTGAAATATGTGTAAAGTTCTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCTGCTCGTTGTGCAGCTGAGTACCTTGAAATGACCGAGGATATTGAGAAAGGGAACTTAGTTTTTAAAATTGAGGTATTTCTTACCTCCAGTATATTTCGTAGTTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTTCTTCCATGGTCTGAGGACCTAAAGATAGTTGGCAGATGCATAGATTCCATAGCCTCTAAAACTTCTGTGGACCCAGCAAACATCACTTGGTCCTATACTTATAACAGGAAGTTATCAGAACTTGATAAAATTGTTGAGGACAAGACAGCACCACATGAGAAAATTGAGCCTGTTCCCAAGGATTGGTGGGTTGAAGATATATGTGAGCTTGACATTGATCTATATAAACGGGTTATGATTACAATCAAATCCAAGGGAAGAATGGATGGAGTTGTGATTGGTGAAGCACTAAAAATGTATGCTGTCAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCCGATGCTCATGCCCGGAGGAACAAATCTCTAGTAGAAACAATTGTCTGTCTATTGCCATGTGATAATGGCATGGGTTGTTCATGTAGTTTCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTAGAAGCTGATGAGTTTTCAAGGGGACACTTGATGAAGAACATTGGCCTAAAATTGCATGAAGCTTCTGTCAGAGATTTACTGATTCCAGCAAGGCTTCCCCTAATCACCAAATTTGATATTGATTTGGTGCAAGATCTTTTGAATCTATACATGACTAACTTAAGGGGAAGCCGTGATATTGAGAGTGAGGAAAAGAAAGACAAAGCAAACGAGTCTATGTTAGGACAGAGGTCTTTATTGAATGTTGGCAAGTTGGTGGATGGCTATCTTGGAGAAGTTGCACATGATCCAAATCTCGGCCCTACTAGTTTTGTCGATATCTCACAGTCAATTCCAGATTTTGCCAGACCAAATCATGATGGTCTGTACAGAGCTATAGATATCTACTTGAAGGAGCACCCAGGTTTGACAAAAACTGAAAGGAAGAAGATATGTGGTCTAATGGATGTTAAGAAGTTGACAGTGGATGCATCAATGCATGCTGCACAGAATGAGCGTCTTCCCCTTAGAGTGGTTGTGCAGGTTCTCTATTTCGAGCAGATAAGAGCTGCTGCCGCCTCCAACGGCCGGACACGTGGCAACAGTCCACGCGACTCCTCGAGCACTGTTGTGAATGGTGATGGGGAGTGTGTGAAAAGCGGGGGAGAGAGCTGCCATTCCCACAACACCCAGATGTGTGAGTTGAAGACGAGAGACGAGGAGTTTCAGAAGAATGGGAAGCTTAACAAGAAGAGTAGCAAAAACAGCAGAAGTGGCATGCAGTTGCTGCCATCAAGATCAAGGAGAATCTTTGACAAGTTATGGATTGTTGGAAAAGGGCAAGGAGAGAACAGGAGTTCAGAGACTTCAGGGAGTTCTAACAGTCCAACATCTGTAGTCCCTGGAGACACCAAATCATCTGGTTCATCATTGAGACACAGGAGGCATTCTATCTCTTAA 1854 0.4213 MKFMKLGSKPDALQADGKSVRYISSELATDILITVGEVKFHLHKFPLLSKSNRLQKLLTKANEECSDEIQLDDFPGGSKAFEICVKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIEKGNLVFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSELDKIVEDKTAPHEKIEPVPKDWWVEDICELDIDLYKRVMITIKSKGRMDGVVIGEALKMYAVRWLPDSVDALVSDAHARRNKSLVETIVCLLPCDNGMGCSCSFLLKLLKVAILVEADEFSRGHLMKNIGLKLHEASVRDLLIPARLPLITKFDIDLVQDLLNLYMTNLRGSRDIESEEKKDKANESMLGQRSLLNVGKLVDGYLGEVAHDPNLGPTSFVDISQSIPDFARPNHDGLYRAIDIYLKEHPGLTKTERKKICGLMDVKKLTVDASMHAAQNERLPLRVVVQVLYFEQIRAAAASNGRTRGNSPRDSSSTVVNGDGECVKSGGESCHSHNTQMCELKTRDEEFQKNGKLNKKSSKNSRSGMQLLPSRSRRIFDKLWIVGKGQGENRSSETSGSSNSPTSVVPGDTKSSGSSLRHRRHSIS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1673 617 Pfam NPH3 family 211 463 IPR027356 -
Vra6g1673 617 Gene3D Potassium Channel Kv1.1; Chain A 11 122 IPR011333 -
Vra6g1673 617 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vra6g1673 617 MobiDBLite consensus disorder prediction 492 512 - -
Vra6g1673 617 MobiDBLite consensus disorder prediction 541 562 - -
Vra6g1673 617 SMART BTB_4 29 127 IPR000210 GO:0005515
Vra6g1673 617 CDD BTB_POZ_NPY3-like 20 124 - -
Vra6g1673 617 ProSiteProfiles NPH3 domain profile. 211 487 IPR027356 -
Vra6g1673 617 MobiDBLite consensus disorder prediction 491 526 - -
Vra6g1673 617 MobiDBLite consensus disorder prediction 578 617 - -
Vra6g1673 617 Pfam BTB/POZ domain 26 117 IPR000210 GO:0005515
Vra6g1673 617 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 605 IPR029961 GO:0060918|GO:0099402
Vra6g1673 617 MobiDBLite consensus disorder prediction 580 605 - -
Vra6g1673 617 PANTHER OS12G0117600 PROTEIN 4 605 IPR043454 -
Vra6g1673 617 SUPERFAMILY POZ domain 22 114 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1673 Vra-Chr6 32740266 32744777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1673 22 541 EF-hand Containing Proteins AT3G44820 32.500 8.92e-91 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1673 - - gmx:100809437 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1673 6 32740266 32744777 Vra6g1673 6 32740266 32744777 ECH
Vra6g1673 6 32740266 32744777 Vra5g1302 5 19958695 19963250 PCT