Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1302 ATGAAGTTTATGAAGTTGGGTTCCAAGCCTGATGCTCTTCAAGCTGATGGAAACTCTATAAGGTATGTGTCATCTGAATTGGCTACAGATGTTACTGTTACTGTTGGTGATGTTACGTTTCACCTCCACAAGTTCCCTCTACTGTCGAAAAGCAACCAACTGCAAAAATTGGTATCAAAAGCTAATGAAGAGAGCTCTGATGATATTTACTTGGATGATTTTCCTGGAGGACCAAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGATGTGCAGCTGAGTATCTCGAGATGACTGAAGATGTTGATAGAGGAAACTTGGTTTTAAAGATTGAGGTGTTTCTTAACTCGAGTATCTTCCGCTGCTGGAAGGATTCTATAATTGTTCTCCAAACTTCTAAATCTCTTCTGCCATGGTCTGAGGATCTGAAGATCATTGGGAGATGCATAGACTCCATAGCTTCTAAAACTAGTGTGGATCCAGCATACATCACTTGGTCTTACACTTACAACAGGAAATTAGCTGAACCTGATAAAATTGTTGAGGACAAGATGACATTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGAAGAATGGATGGTCTTGTTATTGGGGAGGCACTAAAAACCTATGCCTTAAGATGGATACCTGATTCTGTGGATACATTAGTTTCTGGTGCCAATGCCTCAAGGACTAAATCTGTGGTAGAAACAATTGTCTGTCTGTTGCCATATGATAATGGCATTGGTTGTTCGTGTAGTTTCTTACTGAAGCTATTAAGAGTGGCCGTACTAGTCTCTGCAAATGAGTCATCAACAAAAGAATTGATGAAGAGCATCAGCTTTAAATTGCATGAAGCTTGTGTCAAAGATTTACTGATTCCAGCAAGGTCTCCCCAGACTACCAAATACGATGTTCATTTGGTACAAGGTCTTTTGAATCAATACATGAATGACAAAAAAGGAAGCCGTGGCATGGAGGTTGTTGAGGAGAAACATGGAGAAGATGAATATATTTTAGCACGAAGGTCTTCATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACACGATCCTGATCTTGGCCTCTCTAGTTTTGTTGATTTGTCACAATCCATTCCAGGTTTCGCTAGACCAGATCATGATGGTCTATACAGAGCTATAGACATCTACTTAAAGGAGCACCCAGAATTGACTAAAGCCGAAAGAAAGAAACTATGTGGACTGATGGATGTCAGAAAATTGACTGCAGATGCTTCCATGCATGCTGCACAGAATGAATTCCTTCCCCTTCGAGTTGTAGTCCAAGTTCTCTTCTTTGATCAGGTAAGGTCTTCTATCAGCTTTCAATCACTCGGTCACAGTAGCACGTATGACCCTTCAAGCTCTCCAATGAATCGAGATGAGGGGTGTAAGAAAACGATGGAAGATAGCTGCCAACCCCTCAATAACCAGATGAGCCATTTGAGGATCAAGGATGAAGAGTTGCATAAAAATGGGAAATTAGGTAAGAAGAATGGCAAAAACAGCAAAAGTGGCCTTCAGTTGCTGCCGTCAAGATCAAGGAGAATTTTTGATAAGTTATGGAGTGTGAGAAAAGTACTAGGAGAGCATAGGAGCTCAGACACTTCAGGGAGTTCTAGTAGCCCAACTTCTTTAGGCCATGGTGACACCAAATCATGTAGCCTCTCTTTGAGACACCAGAGGCATTCCATCTCTTAG 1851 0.409 MKFMKLGSKPDALQADGNSIRYVSSELATDVTVTVGDVTFHLHKFPLLSKSNQLQKLVSKANEESSDDIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDRGNLVLKIEVFLNSSIFRCWKDSIIVLQTSKSLLPWSEDLKIIGRCIDSIASKTSVDPAYITWSYTYNRKLAEPDKIVEDKMTFLEKIESVPKDWWVEDICELDIDLYKRVMVAVKSKGRMDGLVIGEALKTYALRWIPDSVDTLVSGANASRTKSVVETIVCLLPYDNGIGCSCSFLLKLLRVAVLVSANESSTKELMKSISFKLHEACVKDLLIPARSPQTTKYDVHLVQGLLNQYMNDKKGSRGMEVVEEKHGEDEYILARRSSLNVGKLVDGYLGEIAHDPDLGLSSFVDLSQSIPGFARPDHDGLYRAIDIYLKEHPELTKAERKKLCGLMDVRKLTADASMHAAQNEFLPLRVVVQVLFFDQVRSSISFQSLGHSSTYDPSSSPMNRDEGCKKTMEDSCQPLNNQMSHLRIKDEELHKNGKLGKKNGKNSKSGLQLLPSRSRRIFDKLWSVRKVLGEHRSSDTSGSSSSPTSLGHGDTKSCSLSLRHQRHSIS* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1302 616 ProSiteProfiles NPH3 domain profile. 211 487 IPR027356 -
Vra5g1302 616 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 601 IPR029961 GO:0060918|GO:0099402
Vra5g1302 616 MobiDBLite consensus disorder prediction 583 616 - -
Vra5g1302 616 SUPERFAMILY POZ domain 22 116 IPR011333 -
Vra5g1302 616 MobiDBLite consensus disorder prediction 495 522 - -
Vra5g1302 616 Gene3D Potassium Channel Kv1.1; Chain A 4 125 IPR011333 -
Vra5g1302 616 CDD BTB_POZ_NPY3-like 21 124 - -
Vra5g1302 616 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vra5g1302 616 MobiDBLite consensus disorder prediction 579 616 - -
Vra5g1302 616 Pfam NPH3 family 211 463 IPR027356 -
Vra5g1302 616 PANTHER OS12G0117600 PROTEIN 4 601 IPR043454 -
Vra5g1302 616 SMART BTB_4 29 127 IPR000210 GO:0005515
Vra5g1302 616 Pfam BTB/POZ domain 25 115 IPR000210 GO:0005515
Vra5g1302 616 MobiDBLite consensus disorder prediction 495 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1302 Vra-Chr5 19958695 19963250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1302 8 486 EF-hand Containing Proteins AT3G44820 33.661 5.19e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1302 - - gmx:100784205 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1302 5 19958695 19963250 Vra5g1302 5 19958695 19963250 ECH
Vra6g1673 6 32740266 32744777 Vra5g1302 5 19958695 19963250 PCT