Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1671 ATGATGCATCGGTTTTCATTGGTGATTCTTGTGTTGACAATATGTGGCGTGAGATGCAGAATGGCGAAAGCAGAAGAGAATGTGTACACGCTGGCTTCGGTGAGGGAGGATTTGATTAGGCAAGAGGATACCATCATTTATGGTCTCATTGAGAGAGCTAAGTTTCCTTCCAATTCTCACACTTATGATGAGAAGTATGCTCAAATCCCTGGCTTTTCTGGCTCATTGGTGGAGTTTGTTGTTAAAAATACAGAGGATGTTCAAGCTAAGGCTGGAAGATACACAAACCCTGAAGAAAATCCCTTCTTCCCTGAAAATTTACCACCAACAAGTGTGCCATCTTATCCCTTCTCACAGTTTTTGCATCCTGGAGCTGCTTCAATTAACATAAACAAGTCCGTCTGGAAAATGTATTTGCGAGATTTACTTCCATTGCTTGCTACTTCGGGTGATGATGGCAACTATGCGCAAACTGCTGCTGCTGATCTTTCATTACTGCAGGCTATCTCAAGAAGGATTCACTATGGAAAGTTTGTGGCTGAGGTGAAATTCAGGGATGCTCCTCAAGACTATGAGCCTTTAATTCGAGCAAAGGATAGAGAAGGTTTGATGAAATTGTTGACATTTGCGAGCGTTGAAGAGACAGTGAGGAAGAGGGTTGAAAAGAAGGCCACAGTGTTTGGTCAGGAAGTAGGTCTTGACAGTGATAATGATGGCAAAGGAAAAAGTAAGTTTGATCCAACGGTGGCTTCTCGTTTGTACAAAAATTGGGTGATACCTCTCACCAAAGAGGTTCAGGTTGAGTACCTCTTGCGCCGTGTAGACTGA 828 0.43 MMHRFSLVILVLTICGVRCRMAKAEENVYTLASVREDLIRQEDTIIYGLIERAKFPSNSHTYDEKYAQIPGFSGSLVEFVVKNTEDVQAKAGRYTNPEENPFFPENLPPTSVPSYPFSQFLHPGAASININKSVWKMYLRDLLPLLATSGDDGNYAQTAAADLSLLQAISRRIHYGKFVAEVKFRDAPQDYEPLIRAKDREGLMKLLTFASVEETVRKRVEKKATVFGQEVGLDSDNDGKGKSKFDPTVASRLYKNWVIPLTKEVQVEYLLRRVD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1671 275 PIRSF Chor_mut_AroQ_eu 18 275 IPR008238 GO:0004106|GO:0009073
Vra6g1671 275 TIGRFAM CM_pl-yst: chorismate mutase 30 275 IPR008238 GO:0004106|GO:0009073
Vra6g1671 275 PANTHER CHORISMATE MUTASE 1 275 - -
Vra6g1671 275 SUPERFAMILY Chorismate mutase II 25 275 IPR036263 GO:0046417
Vra6g1671 275 PANTHER CHORISMATE MUTASE 1 275 IPR008238 GO:0004106|GO:0009073
Vra6g1671 275 ProSiteProfiles Chorismate mutase domain profile. 22 275 IPR008238 GO:0004106|GO:0009073
Vra6g1671 275 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 23 275 IPR037039 GO:0004106|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1671 Vra-Chr6 32717253 32720091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1671 K01850 - gmx:100791341 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1671 6 32717253 32720091 Vra6g1671 6 32717253 32720091 ECH
Vra6g1671 6 32717253 32720091 Vra5g1299 5 19925743 19927246 PCT