Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1299 ATGGATCCGATAAAATTCCGTTGTAAGGAGTGTCACAAAAGGGTGGAAGCACAGTACACACTAGATTCAGTAAGAGCGTCATTGGCTAGACAAGAAGACACCATCATATTTGCTTTGATTGAAAGAGCCAAGTTTCCTTTGAATAACTTTGGCCACAATCGGCTTTTCGGTTCAGACGAATATATCGGTTCAATGATTAACGGCCTCGTTCTCAAAACAGAGGCAGTTCAATCCAAGGCAGGTAGATACATTAATCCTGAAGAAAATCCGTTCTTCCCAGAAAATTTACCACCCTCGGCTGCACCAGATTACCCCTTTTCAGAGTTTTTGCAAGGTGCAGGTGCTTCGATTAACATAAACAAGGAAATTTGGGAAGTGTACTTTCATGAGCTGATTCCAATGTTCATTAAATGTGGTGATGATGGCAACCATGCACAAAGTGTTTTAGCCGATCTTACGTTGTTGCAGGCCATCTCGAGAAGGATTCACTATGGAAAATTTGTTGCTGAGGTCAAATTTAGAGAATCTCCTAAAATCTACGAGCCTTTAATTCGTGCCAAGGACAGCGAAGGATTGATGGATGAATTGAGTTCTGAGAGTGTTGAAGAGAGGGTGGTGAAGAGGGTTGAAAGGAAGGCCACGGTATTTGGGCAGGAAGTGAGCCTTGAATATGATGTCTCGGGAGATACATACATGATTAATTCAGTGGCTTCTAAGTTGTACAAGAAATATTTAATTCCACTCACAAAAAAAGTTCAAGTCGAATACTTACTAAAACGCCTCGATTGA 789 0.4119 MDPIKFRCKECHKRVEAQYTLDSVRASLARQEDTIIFALIERAKFPLNNFGHNRLFGSDEYIGSMINGLVLKTEAVQSKAGRYINPEENPFFPENLPPSAAPDYPFSEFLQGAGASININKEIWEVYFHELIPMFIKCGDDGNHAQSVLADLTLLQAISRRIHYGKFVAEVKFRESPKIYEPLIRAKDSEGLMDELSSESVEERVVKRVERKATVFGQEVSLEYDVSGDTYMINSVASKLYKKYLIPLTKKVQVEYLLKRLD* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1299 262 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 12 262 IPR037039 GO:0004106|GO:0009073
Vra5g1299 262 ProSiteProfiles Chorismate mutase domain profile. 12 262 IPR008238 GO:0004106|GO:0009073
Vra5g1299 262 TIGRFAM CM_pl-yst: chorismate mutase 20 262 IPR008238 GO:0004106|GO:0009073
Vra5g1299 262 PANTHER CHORISMATE MUTASE 7 262 - -
Vra5g1299 262 PANTHER CHORISMATE MUTASE 7 262 IPR008238 GO:0004106|GO:0009073
Vra5g1299 262 SUPERFAMILY Chorismate mutase II 14 262 IPR036263 GO:0046417
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1299 Vra-Chr5 19925743 19927246 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1299 K01850 - gmx:100791095 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1299 5 19925743 19927246 Vra5g1299 5 19925743 19927246 ECH
Vra6g1671 6 32717253 32720091 Vra5g1299 5 19925743 19927246 PCT