Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1586 ATGGCTTCCAACAAGCTTATTGCCACCATCTTGCTGCTTTCTCTCCTTGCCTACTCCACATCAACCTATGCATGTGGGACATGCCATCCCAAATCTCCTCCTCCTCCTTCTCCTCCTCCATCTGGGAAGTGCCCTAAGGACACACTGAAGCTAGGGGCTTGTGCTGACATTCTAGGACTTGTTAACGTTGTTGTTGGCTCGCCTGTCTCTAGCAAGTGTTGTTCATTGCTTGAGGGTTTGGCTGATCTAGAGGCTGCACTTTGCCTCTGCACTGCCATCAAAGCCAATGTGCTTGGAATCAACTTGAATATCCCTATCACACTCAGTGTGCTCCTCAGTGCATGCCAAAAAACTGTTCCTTCTGGCTTCCAATGTGCATAG 381 0.4908 MASNKLIATILLLSLLAYSTSTYACGTCHPKSPPPPSPPPSGKCPKDTLKLGACADILGLVNVVVGSPVSSKCCSLLEGLADLEAALCLCTAIKANVLGINLNIPITLSVLLSACQKTVPSGFQCA* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1586 126 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vra6g1586 126 PANTHER - 30 126 - -
Vra6g1586 126 Gene3D - 38 126 IPR036312 -
Vra6g1586 126 SMART aai_6 44 125 IPR016140 -
Vra6g1586 126 Pfam Hydrophobic seed protein 44 126 IPR027923 -
Vra6g1586 126 CDD HPS_like 42 125 IPR027923 -
Vra6g1586 126 PANTHER LIPID TRANSFER PROTEIN 30 126 - -
Vra6g1586 126 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 47 125 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1586 Vra-Chr6 31314384 31314952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1586 37 125 Acyl Lipid Metabolism Gene Families AT4G22490 36.957 1.42e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1586 - - gmx:100306307 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1586 6 31314384 31314952 Vra6g1586 6 31314384 31314952 ECH
Vra6g1586 6 31314384 31314952 Vra5g1220 5 18584840 18585697 PCT