Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1220 ATGGCTTCCCACAAACTCCTCACCATTTTCCTGCTTTCTCTCATGTCTTACTCTTCATTCAGTCAGGACTGCACACCTCCAAAGCCCGCACCCACACCACCTACTCCAAAGCCACCACCCAGTCCAAAGGTAAGCCCGCCGCCCACCCCAAAGGTAAGTCCACCACCCTCGCCCACACCGCCCAGCCCAAAGCCCAGCCCAAAGGTAAGTCCACCAACCTCGCCCAATGCCTGTCCTCCTACTCCTCCTACTCCTACTCCTCCTCCACCTGCTTCCTGTCCTAAAGACACCCTAAAGCTAGGTGTTTGTGCCAAGGTCTTAGGACTTGTGAACATTATTGTTGGAACTCCACCTACGAGTGACTGTTGCGCTTTGATCAAAGACTTGGCGGATTTGGAAGCTGCACTTTGCCTTTGCACTGCCATTAAGGCCAATGTGCTTGGAATCAACTTGAATGTTCCTGTCACGCTCAGCGCGATCCTCAGTGCGTGTCAGAAAACTGTTCCTCCTGGCTACCAATGTCCCTCCTAG 531 0.533 MASHKLLTIFLLSLMSYSSFSQDCTPPKPAPTPPTPKPPPSPKVSPPPTPKVSPPPSPTPPSPKPSPKVSPPTSPNACPPTPPTPTPPPPASCPKDTLKLGVCAKVLGLVNIIVGTPPTSDCCALIKDLADLEAALCLCTAIKANVLGINLNVPVTLSAILSACQKTVPPGYQCPS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1220 176 CDD HPS_like 91 174 IPR027923 -
Vra5g1220 176 PANTHER LIPID TRANSFER PROTEIN 46 175 - -
Vra5g1220 176 SMART aai_6 93 174 IPR016140 -
Vra5g1220 176 Pfam Hydrophobic seed protein 93 175 IPR027923 -
Vra5g1220 176 Gene3D - 91 176 IPR036312 -
Vra5g1220 176 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 96 175 IPR036312 -
Vra5g1220 176 MobiDBLite consensus disorder prediction 26 92 - -
Vra5g1220 176 MobiDBLite consensus disorder prediction 20 92 - -
Vra5g1220 176 PRINTS Proline rich extensin signature 26 42 - -
Vra5g1220 176 PRINTS Proline rich extensin signature 54 66 - -
Vra5g1220 176 PRINTS Proline rich extensin signature 67 88 - -
Vra5g1220 176 PANTHER - 46 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1220 Vra-Chr5 18584840 18585697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1220 81 175 Acyl Lipid Metabolism Gene Families AT4G22490 39.175 3.94e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1220 - - gsj:114414965 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1220 5 18584840 18585697 Vra5g1220 5 18584840 18585697 ECH
Vra6g1586 6 31314384 31314952 Vra5g1220 5 18584840 18585697 PCT