Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1574 ATGTCTCACCACCAAACCACCCTCATGCTGCCCAATCCCACCACCCCTACCCGCTCCTCCTCTGCCTCCTCCTCCCCTCTCCCACTCATCCACGCCATCTTCGCCAGAAAAAACCTCTTCTACCACCGCCTTCCCTCCCTACCCCTCCGACTCTCCGTCCTCAAGCTCGATGGCTCCTCCTTCCATATTCAGGTTCCCAAGACCGCCACTATTGCCGAACTCAAAGACGCAGTCGAGGCTGTCTTCGCTCACGCACCTCTCAAGGGTCCCGCCAAAATTTCATGGGCGCATGTTTGGGGACAATTTTGCTTATGCTATGATGGACAGAAGCTAGTTACCGAGGATGATTATCTTCGAAACTATGGCATCAAGGATGGTGACGAGCTTCGTTTCATCCGCCATGTTTCAAACAATTGCTGTGTCCAAAGAAAGCGGTTGAAGAAAAGAATTGTCTATTTGAAACCGCAGAGGAGGTGCAGGTCTTCTCCAGTGGATAGCTATCAAGACAAAAGAAAGAGTGATAGTGATGAGATTGGTTCTGACGATGAAGCCACGGATAATGAGAAATATGACACTGAAGAAGTAGAAGAAGAGCGTGTTGTAAAGAACAAATTTGCTGGCTTTATGGGAGAGTTGTTCTCTTACACTCCACTGGCAGTTGTAAGACGAACTACAACTAAAAGCAGGATTTGGCCATCAACTATTCCCAGATGTTTGGTGGGTAGTTTTAGAAAAATTAGAAGTATTGTATGCTTTGGCAGGAGAAGGCCCTATTCTCGGAGACTTACATGGAGACATATGGGTTAA 807 0.4758 MSHHQTTLMLPNPTTPTRSSSASSSPLPLIHAIFARKNLFYHRLPSLPLRLSVLKLDGSSFHIQVPKTATIAELKDAVEAVFAHAPLKGPAKISWAHVWGQFCLCYDGQKLVTEDDYLRNYGIKDGDELRFIRHVSNNCCVQRKRLKKRIVYLKPQRRCRSSPVDSYQDKRKSDSDEIGSDDEATDNEKYDTEEVEEERVVKNKFAGFMGELFSYTPLAVVRRTTTKSRIWPSTIPRCLVGSFRKIRSIVCFGRRRPYSRRLTWRHMG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1574 268 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g1574 268 MobiDBLite consensus disorder prediction 179 193 - -
Vra6g1574 268 CDD Ubl_SNRNP25 49 134 IPR040610 -
Vra6g1574 268 Pfam Ubiquitin-like domain 49 135 IPR040610 -
Vra6g1574 268 PANTHER - 3 264 - -
Vra6g1574 268 SUPERFAMILY Ubiquitin-like 48 140 IPR029071 -
Vra6g1574 268 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 3 264 IPR039690 GO:0000398|GO:0005689
Vra6g1574 268 MobiDBLite consensus disorder prediction 161 193 - -
Vra6g1574 268 Gene3D - 46 142 - -
Vra6g1574 268 MobiDBLite consensus disorder prediction 163 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1574 Vra-Chr6 31101494 31105277 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1574 - - pvu:PHAVU_001G050800g 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1574 6 31101494 31105277 Vra6g1574 6 31101494 31105277 ECH
Vra6g1574 6 31101494 31105277 Vra5g1216 5 18543303 18544240 PCT