Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1216 ATGGCAAACATGATTATGGCTTCCACCAAACCTTTGGTTCCAGTCTACACCAATTCTCGTTCTCCCACGCCCAAACTTCCCATTCTCCAAATTTCACTCCCCAAAGTCCCAACCCTTAAACTGAAACTCCCAATACCAAAGCCCCAGATGCTATCCCTCCTGGGCGGAATAGCACCACTGATTTTGGCACAGCCCTCCCTGGCAAGCGAAATAGAGAAAGCTGCACTGTTCGACTTCAACCTGACCCTGCCCATTATAATGGTAGAGTTTCTGTTTCTGATGGTTGCGCTGGACAAAATATGGTTCACCCCACTTGGGAAATTCATGGACGAGAGGGACTCGGCGATCAGGGAGAAGCTAAACAGCGTGAAGGACACGTCGGAGGAGGTTAAGCAGCTGGAGGAGAAGGCGAATGCGGTGATGGCGGCTGCTCGGGCGGAGATTGCGGCGGCGCTGAACGCGATGAAGAAGGAGACGCAGGCGGAGGTGGAGCAAAAGATTGCGGAGGGAAGGAAGAAAGTGGAGGCTGAGCTGCAAGAGGCTCTGGCTAACTTGGAGAGGCAAAAGGAAGAAACCATCAAGTCCCTTGATTCCCAGATTGCAGATCTTAGCCAGGAGATTGTTAAAAAGGTTCTTCCCGTTGCTTAA 648 0.5154 MANMIMASTKPLVPVYTNSRSPTPKLPILQISLPKVPTLKLKLPIPKPQMLSLLGGIAPLILAQPSLASEIEKAALFDFNLTLPIIMVEFLFLMVALDKIWFTPLGKFMDERDSAIREKLNSVKDTSEEVKQLEEKANAVMAAARAEIAAALNAMKKETQAEVEQKIAEGRKKVEAELQEALANLERQKEETIKSLDSQIADLSQEIVKKVLPVA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1216 215 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 214 - -
Vra5g1216 215 Coils Coil 116 206 - -
Vra5g1216 215 Hamap ATP synthase subunit b' [atpF2]. 76 213 IPR034679 GO:0015078|GO:0015986|GO:0045263
Vra5g1216 215 Hamap ATP synthase subunit b [atpF]. 77 214 IPR002146 GO:0015078|GO:0015986|GO:0045263
Vra5g1216 215 Pfam ATP synthase B/B' CF(0) 83 212 IPR002146 GO:0015078|GO:0015986|GO:0045263
Vra5g1216 215 CDD ATP-synt_Fo_b 82 212 - -
Vra5g1216 215 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 214 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1216 K02109 - pvu:PHAVU_009G092400g 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1216 5 18543303 18544240 Vra5g1216 5 18543303 18544240 ECH
Vra6g1574 6 31101494 31105277 Vra5g1216 5 18543303 18544240 PCT