Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1570 ATGGATCCAATTAACCTTTTACCTGCTGATGGGGTTGGAGTGGTCCACCAAAATGGTGTCCATGATGAACCTTCAAATTCTGGGGAGGATGGTGGTGCTCCATATGATTTAGACCCCAGTCTCACTGAAACTGCAGAAACTGTTGCTTCAAATGGAAATTTTGATAATTTCCATCAGTCAGAAAGTGCTGCAATTGATAACTCATTTGTGGCAGAAATCAAAGAATCAAATGACATTGCCGATGGCAATAACGTGATCATTACTAAGGAAGAGGATACAAAAATATCAGACCAAACAAAACAATCAAGGGCACCAAAGGGTCTTGTCAAGAATAAGAATGCAAAGGCTCCAAGTTCCAGTGGAGTTCATGCAAGTTTGGTAAATAAGAGCAAAATTGGAAAAGAAAAAGAAGCATCTTCATCTGTTTCAAATGGTACTTTAGCTTTAGACTCTCGCCCAAAACAGTCTATTAAAAGCAGCAGATTATTCAATGATCGGCAGACTCAATTGTCCAAGCCCAAGCACTCTTTGAAGTCTGATGAAGCATCTTCTGAAGTGTCAATGGAGAAGACAAAACCAAAATCATTGAGAAAAGGACCGGTTAAAGATCAAGGAGAAGAAGATTCTTCCCTTACCAACAATGAAGATGCCAAACCTCAAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGCGAACGAGCTGAGAGAAGAAAAGAGTTCTATAATAAGCTTGAGGAAAGGATTCAGGCAAAGGAGGCAGAGAAGAGTAATTTGCAAGCAAAAACCAAGGAGACCCAAGATGCCGAGATTAAGAAGCTTAGGAAGAGTCTAAATTTTAAAGCAACTCCAATGCCAAGTTTTTATCAGGAGCCTGCTCCTCCTAAGGTTGAGCTAAAGAAGATACCAACTACAAGGCCAAAGTCTCCCAAGTTTGGTCGTAAGAAGAGTTCAGCTAATTCAGAGTCAGATGGAAACACTAGCAGCAGTTCAAGATTAGCTCGCTTAAGTCTGGATGAGAAAGTGTCAGAGAGTAACCCCGGGAAGGGACCTAATCCTGTCCTTCAAAAGAAACCGCTTCGAAGATCTCTTCCTTCTCGTCTGACCTCTGAAAAGAACAATGTATCGAAATCCAAGGCCACCAAAGATGAAAAGTCTTCCTTATCTCGTGCTGCTAAAAAGAATATCAACATATCCAGTGCTACAGGAGAAGAGAAAACCGACGTGATTGCAGCGACCGAGGAGAAAAATATCTTGTCCAGTGAAACAGGTGATGCTGTGCCTCTGAATATGGTTCCTTCAGATAATAAGCCAAGTGAAGAAGAAGACTCTCATGTGAATGTTGATATAGCAGTTGAAGAGAATCCTCTGCCCCCATTGGCACAAGAAGCTGTTGCCACAGAGCAATGA 1419 0.4158 MDPINLLPADGVGVVHQNGVHDEPSNSGEDGGAPYDLDPSLTETAETVASNGNFDNFHQSESAAIDNSFVAEIKESNDIADGNNVIITKEEDTKISDQTKQSRAPKGLVKNKNAKAPSSSGVHASLVNKSKIGKEKEASSSVSNGTLALDSRPKQSIKSSRLFNDRQTQLSKPKHSLKSDEASSEVSMEKTKPKSLRKGPVKDQGEEDSSLTNNEDAKPQRVGTLPNYGFSFKCGERAERRKEFYNKLEERIQAKEAEKSNLQAKTKETQDAEIKKLRKSLNFKATPMPSFYQEPAPPKVELKKIPTTRPKSPKFGRKKSSANSESDGNTSSSSRLARLSLDEKVSESNPGKGPNPVLQKKPLRRSLPSRLTSEKNNVSKSKATKDEKSSLSRAAKKNINISSATGEEKTDVIAATEEKNILSSETGDAVPLNMVPSDNKPSEEEDSHVNVDIAVEENPLPPLAQEAVATEQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1570 472 MobiDBLite consensus disorder prediction 89 231 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 278 472 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 379 393 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 254 273 - -
Vra6g1570 472 Pfam Targeting protein for Xklp2 (TPX2) domain 230 301 IPR027329 -
Vra6g1570 472 MobiDBLite consensus disorder prediction 171 214 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 317 339 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 394 409 - -
Vra6g1570 472 Coils Coil 238 272 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 137 170 - -
Vra6g1570 472 MobiDBLite consensus disorder prediction 1 39 - -
Vra6g1570 472 PANTHER PROTEIN WVD2-LIKE 4 1 459 IPR044833 GO:0008017
Vra6g1570 472 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1570 Vra-Chr6 31037079 31042246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1570 - - gmx:100786958 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1570 6 31037079 31042246 Vra6g1570 6 31037079 31042246 ECH
Vra6g1570 6 31037079 31042246 Vra5g1207 5 18473360 18480987 PCT