Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1569 ATGTCTAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCAATCTACGCCAACCCCAAGGAAGCGAGTTTCTTCCTTCCCCTTGGCCCTCAAGTTGATGTATACTTTCCTCCCAGGAAGAGATCACGAGTCAACGCTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGAAGCCTTACCAGATGAGTGTCTCTTTGAGATCTTCAGAAGGTTGCCAGCTGGCGAGGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAAGATGAAATCTGTGCCATGAAAAACACCAGCACAGAAAACATTGAAAAGGATTATGATGTAGAATTTGGAGGTGAGGGATACCTCTCCCGGAACTTGGAAGGAAAGAAGGCCACAGATGTTAGACTGGCTGCCATAGCTGTTGGAACTGCATCTCGCGGTGGGTTGGGGAAGCTTTCCATCCGAGGAAGCAACATGTGTCGTGGGGTGACTAGTCTTGGTCTCAGGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTTTTTCTCTATGGAACGTTTCTACTGTTGGTGACGAGGGCCTAATCGAGATCGCTAACGGTTGTCACCAGCTAGAAAAGCTCGATCTTTGCAAGTGCCCTGCTGTTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGCTTTCCTTGGAATCGTGCCCTAATGTTGGTAATGAAGGTCTGCGAGCTATTGGGAAGTTCTGCCCCAACCTAAGATCCGTAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTCTGACGAAGGTGAAGCTCCAAGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGGAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTGATGGGAAATGGTAGTGGGTTGCAGAAGCTGAAGTCACTCACAGTTGCTTCATGCAGGGGAGTAACCGATATTGGCCTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAATTGTACACCTTCACAAGTGTGCCTTTTTGTCAGACAATGGGTTGATATCGTTTGCCAAGGCTGCTTCATCCCTCGAGAGCCTTCGATTGGAAGAGTGCCACAGAATCACCCAATTTGGGGTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGTCCATCTCTTTGGTGAGGTGCTACGGAATCAAAGATATGAATTTGGTGTTGCCGACCATTTCTCCTTGTGAATCCCTTAGATCATTGACTATCTGCAACTGCCCTGGATTTGGCAACGCCTCACTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTCGATGGAGTGACTGATGCCGGGGTTCTTCCACTGCTAGAGAGTTCTGAGGCTGGTTTGGTTAAAGTGAACCTCAGTGGCTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAAAATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACAGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCAGACAGGAGCTTGCCCGCCCTGAGAAAATTGGGCCGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGTGGCACCGTTGACATGCTTGTAGAGCTTCTCTGGAGGTGTGACATCCTCTCATAA 1929 0.4743 MSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKDEICAMKNTSTENIEKDYDVEFGGEGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNMCRGVTSLGLRAVAHGCPSLKSFSLWNVSTVGDEGLIEIANGCHQLEKLDLCKCPAVTDKALVAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPNLRSVTIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIVHLHKCAFLSDNGLISFAKAASSLESLRLEECHRITQFGVFGVLFNCGAKLKSISLVRCYGIKDMNLVLPTISPCESLRSLTICNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGVLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCKKISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKLGRTLLGLNIQHCNAINSGTVDMLVELLWRCDILS* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1569 642 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 632 - -
Vra6g1569 642 PANTHER UNCHARACTERIZED 17 632 - -
Vra6g1569 642 Gene3D - 60 110 - -
Vra6g1569 642 Pfam F-box domain 70 107 IPR001810 GO:0005515
Vra6g1569 642 SUPERFAMILY RNI-like 210 640 - -
Vra6g1569 642 Gene3D Ribonuclease Inhibitor 162 239 IPR032675 -
Vra6g1569 642 SMART LRR_CC_2 477 502 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 583 608 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 188 213 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 371 396 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 451 476 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 214 239 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 531 556 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 240 265 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 345 370 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 266 291 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 557 581 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 504 529 IPR006553 -
Vra6g1569 642 SMART LRR_CC_2 397 422 IPR006553 -
Vra6g1569 642 SMART fbox_2 70 111 IPR001810 GO:0005515
Vra6g1569 642 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Vra6g1569 642 Pfam Leucine Rich repeat 477 499 IPR001611 GO:0005515
Vra6g1569 642 Pfam Leucine Rich repeat 563 579 IPR001611 GO:0005515
Vra6g1569 642 Gene3D Ribonuclease Inhibitor 444 503 IPR032675 -
Vra6g1569 642 Gene3D Ribonuclease Inhibitor 565 639 IPR032675 -
Vra6g1569 642 Gene3D Ribonuclease Inhibitor 504 564 IPR032675 -
Vra6g1569 642 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Vra6g1569 642 Gene3D Ribonuclease Inhibitor 240 443 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1569 Vra-Chr6 31030790 31034212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1569 K14515 - gmx:100820247 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1569 6 31030790 31034212 Vra6g1569 6 31030790 31034212 ECH
Vra6g1569 6 31030790 31034212 Vra5g1206 5 18463515 18467103 PCT