Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1206 ATGTCTCAAGTCTTCAGCTTTTCAGGAAATGATGATTTTTACCCTGGGGGTCGTATATATCCTAACCCCAAGGAACCATGTCTCTTCTTGTCTCTTGGCCGTTCTGTTGATTACTTTCCTCTTCAGAAGAGATCTCGCTTCAGTGTTCCCTTTGATATCAATCGAGAGTGGTTTGATGAGCCGAAGCAGAAGGCATCTATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGTTGGCCAAGATAGAAGCGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATCTGTGAGAATGAAAACTGCAACAATGGAAGTACCATAGGTGATAATGTGGTTGGTGATGATGATGATGAGGGATTTAGCAACGAAGGATATCTATCCCGAAGCTTGGAGGGAATGAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGAACAGCCTCTCGAGGAGGGCTGGGGAAGCTTACAATTCGTGGATGCAACTCAGATCGTGGGATGACTAATGTAGGTCTCAAGGCCATTGCTCATGGATGCCCTTCTCTGAAGGTTTTCTCTGTGTTTGATGTTGCTACTATTGATGATGAAGGCCTAATTGAGATTGCTAGCGGGTGTCACAAATTAGAGAAACTTGACCTTTGCAAGTGTCCCAATATTTCCGACAAGACTTTAATCGCAATCTCAAAGAAGTGTCCAAATCTGGCCGAGTTATCAATTGAGTCATGTCCCAACATTGGTAACGAAGGTCTACAAGCTATTGGGAAGTTGTGTTCCAATCTAAGGTCTGTATCAATCAAGGGATGCTCTGGAGTTGGCGACCAGGGAGTTTGTGGCCTCATGTCTTCAGCTTCTTATGTTCTATCAAAGGTGAAGCTTGAGTCGTTGATGGTGTCTGATCTCTCTCTAGCAACGATTGGGCATTATGGCTTTCAAGTTACCAATCTTGTCCTAAGTGACCTGCCAAATGTCAGTGAGAAAGGATTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAACTGAATTCAATCACAATCGAATGCTGCCAAGGTTTGACAGACACAGGGATCGAAGCTATTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCGTAAATGTGCATATCTGTCAGACAAGGGGTTGGTATCACTTACCAGGGCTGCTCTATCAATTGAGAGCCTAAAATTGCACGAGTGCCACAGAATTACCCAAATTGGGCTTTTCGGTGTCTTTTTTCACTGTGCTGCCAAACTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGGAAATGGATTTGCCAGCAATCTCTCCTTCTGAATCGTTTTGGTCCTTAACAATCCGTGACTGCCCTGGATTTGGGGACGCTAATCTTGCACTACTTGGAAAGCTGTGCCCTCGTCTTAAGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGTAGGGTTTCTTCCTCTGCTGGAGTGTTCTGAGACTGGTCTGACAACAGTTAATTTAAGGGGGTGTCTAAATGTGACGGACAGAGTAGTTTTGTCTATTGTGAACTCATATGGATGGACTCTTCAGGTGCTATGCCTTGATGGTTGTACAAGAGTCACCGATGCTAGCATGATGGCAATTGCAGGCAATTGCCCGGTGCTGTCTGATCTTGATGTTTCCAAATGTGCAATCACTGATACCGGTATTGTAGCTCTTGCAAGCGGAAAACAGTTCAACCTGGAGATTCTTTCTTTGGCAGGTTGTATATCGGTTTCAGACAATAGCATGGCGGCATTTAAAAAATTGGGTCAATCCCTTGCAGGCTTGAATATCAAGCGTTGCAGTGCAATCAGCAGCCGGGGCGTCAGCAAGCTTCAGGAACATCTCTGGACGTGTGACATCCTCAACTGA 1935 0.4496 MSQVFSFSGNDDFYPGGRIYPNPKEPCLFLSLGRSVDYFPLQKRSRFSVPFDINREWFDEPKQKASIESLPDECLFEILRRLPVGQDRSVCASVSKRWLMLLSSICENENCNNGSTIGDNVVGDDDDEGFSNEGYLSRSLEGMKATDVRLAAIAVGTASRGGLGKLTIRGCNSDRGMTNVGLKAIAHGCPSLKVFSVFDVATIDDEGLIEIASGCHKLEKLDLCKCPNISDKTLIAISKKCPNLAELSIESCPNIGNEGLQAIGKLCSNLRSVSIKGCSGVGDQGVCGLMSSASYVLSKVKLESLMVSDLSLATIGHYGFQVTNLVLSDLPNVSEKGFWVMGNGRGLQKLNSITIECCQGLTDTGIEAIGKGCPNVKNFQLRKCAYLSDKGLVSLTRAALSIESLKLHECHRITQIGLFGVFFHCAAKLKVLTLISCYGIKDLEMDLPAISPSESFWSLTIRDCPGFGDANLALLGKLCPRLKHVELSGLQRVTDVGFLPLLECSETGLTTVNLRGCLNVTDRVVLSIVNSYGWTLQVLCLDGCTRVTDASMMAIAGNCPVLSDLDVSKCAITDTGIVALASGKQFNLEILSLAGCISVSDNSMAAFKKLGQSLAGLNIKRCSAISSRGVSKLQEHLWTCDILN* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1206 644 SUPERFAMILY RNI-like 163 640 - -
Vra5g1206 644 SMART fbox_2 70 111 IPR001810 GO:0005515
Vra5g1206 644 Pfam Leucine Rich repeat 559 581 IPR001611 GO:0005515
Vra5g1206 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Vra5g1206 644 Gene3D - 60 109 - -
Vra5g1206 644 Gene3D Ribonuclease Inhibitor 294 449 IPR032675 -
Vra5g1206 644 Gene3D Ribonuclease Inhibitor 134 293 IPR032675 -
Vra5g1206 644 SMART LRR_CC_2 241 266 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 399 424 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 189 214 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 585 610 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 373 398 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 215 240 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 559 583 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 611 636 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 267 292 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 347 372 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 479 504 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 506 531 IPR006553 -
Vra5g1206 644 SMART LRR_CC_2 533 558 IPR006553 -
Vra5g1206 644 PANTHER UNCHARACTERIZED 16 634 - -
Vra5g1206 644 Pfam F-box domain 68 106 IPR001810 GO:0005515
Vra5g1206 644 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 634 - -
Vra5g1206 644 Gene3D Ribonuclease Inhibitor 506 639 IPR032675 -
Vra5g1206 644 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Vra5g1206 644 Gene3D Ribonuclease Inhibitor 450 505 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1206 Vra-Chr5 18463515 18467103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1206 K14515 - gmx:100805418 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1206 5 18463515 18467103 Vra5g1206 5 18463515 18467103 ECH
Vra6g1569 6 31030790 31034212 Vra5g1206 5 18463515 18467103 PCT