Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1519 ATGGGGTGTGGAAGGTTTAGGGGGTGCCTTGTTCTTGTGTTATGTGTTGTATTGTTGGTGGGTCTAGTGAGTGGGATTGGTGTTAATTGGGGCACACAATTAACCCACCCTTTGCCATCTTCCACTGTGGTGAAAATGCTGAAGGACAATGGTATTCAGAAAGTTAAGCTTTTTGATGCTGATCCTGATATTTTAAATGCTCTAAAGAAGTCTGGGATTCAGGTGATGGTTGGTATACCAAATGACATGCTCTACACATTGGCCAACAGCATGCAAGCGGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCATTTGTCTCATCTGCGGGTGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTTCATTTGAAACCACAACACTTCCAGCTCTTCAAAACATCCAAGCAGCTCTAGTGAAAGCTAGTTTAGGCAACCAGGTTAAAGTCACAGTGCCTCTGAATGCTGATGTTTATCAGAGTGCACAAGTACCCTCAGACGGTGACTTCAGGCAAGACATCCATGATCTCATGGTGCAGATTGTGAAGTTCTTGAGTCAGAACAATGCCCCATTTACAGTGAACATCTATCCTTTCATCAGCCTCTATGAAGACCCCAATTTTCCTGTTGATTATGCCTTCTTCAATGGCTTTCAATCCCCCATAAATGACAATGGAAGGATCTATGACAATGTCTTTGATGCCAACCATGATACTCTAGTATGGGCCCTGCAAAAAAATGGTTTTGGAAACATGCCTATAATTGTAGGAGAAGTAGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAATATGCGCAACGGTTTAACCAGGGCTTCATGTCACGCTACATGGCCGGAAAGGGGACACCGATGAGGCCTGGTCCTATGGATGCTTACTTGTTCAGTCTCATAGATGAAGATGGCAAAAGCATTCAGCCAGGTAATTTTGAAAGACATTGGGGTTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATAGGATCAAGAACCAATGGCTTAGTTGGTGCAACTGGGGTAGCATATCTGGCCAAAAAGTGGTGCATTTTGAAACCCTCAGCAAACCTCAATGATGACCAAGTGGCACCTAGTGTGTCTTTTGCTTGTCAGAATGCAGATTGTACAAGTCTTGGATATCAAACTTCATGTGGTAGTTTAGATACTCGTGGTAACATTTCTTATGCATTCAATAGCTATTACCAAGTGAATGATCAGATTGACAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAGAGATCCTTCAACTGGAGATTGCAAATTCAAGATCATGATCCAGACAGATTCTGCTGGCAAGCATGGGAATGGGAGAATTTGGCATCTCAGAATGGTACTCTTGGCATTTTTGTTTTTCACTCTTCTGTGA 1443 0.4297 MGCGRFRGCLVLVLCVVLLVGLVSGIGVNWGTQLTHPLPSSTVVKMLKDNGIQKVKLFDADPDILNALKKSGIQVMVGIPNDMLYTLANSMQAAEKWVSKNVSAFVSSAGVDIRYVAVGNEPFLSTYNGSFETTTLPALQNIQAALVKASLGNQVKVTVPLNADVYQSAQVPSDGDFRQDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFQSPINDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYMAGKGTPMRPGPMDAYLFSLIDEDGKSIQPGNFERHWGLFYYDGQPKYQLNIGSRTNGLVGATGVAYLAKKWCILKPSANLNDDQVAPSVSFACQNADCTSLGYQTSCGSLDTRGNISYAFNSYYQVNDQIDSACKFPGLSVVTDRDPSTGDCKFKIMIQTDSAGKHGNGRIWHLRMVLLAFLFFTLL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1519 480 Gene3D Glycosidases 25 350 - -
Vra6g1519 480 Pfam Glycosyl hydrolases family 17 26 343 IPR000490 GO:0004553|GO:0005975
Vra6g1519 480 Gene3D - 359 459 - -
Vra6g1519 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 14 457 - -
Vra6g1519 480 SMART X8_cls 363 447 IPR012946 -
Vra6g1519 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 457 IPR044965 GO:0004553|GO:0005975
Vra6g1519 480 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Vra6g1519 480 Pfam X8 domain 363 432 IPR012946 -
Vra6g1519 480 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1519 Vra-Chr6 30086252 30089522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1519 4 458 Glycoside Hydrolase AT4G31140 71.711 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1519 K19893 - gmx:100775918 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1127 5 17734182 17738163 Vra6g1519 6 30086252 30089522 PCT