Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1127 ATGGGGGGTGGAAACTTTGGAAGGTGTGATTTTGTTGTTGTTGTGGTGTTGGTGGTGTTGGTGGGGTCAGTGAGTGGGATTGGTGTGAACTGGGGGACACAGTCGACACACCCTTTGTCTCCTTCGAAGGTGGTGAAGATGCTGAAGGACAATGGCATTCAGAAGGTGAAGCTTTTTGATGCTGATCCTGGTATTTTGGATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGGATTCCCAATGACATGCTTTATACGCTCGCCAACAGTGTTGAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCCAAACATGTCTCTTCTGGAGGAGTTGACATCAGGTATGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAATAGAACTTATGAAACCACAACTCTTCCAGCACTTCAAAACATTCAGGCAGCTCTCACAAAGTCCGGTTTGAGCAACCGTGTGAAGGTCACAGTCCCCTTAAATGCCGATGTGTACCAAAGCTCGTCAGAGAAGCCGTCAGACGGCGGTTTCAGACCAGACATTAACAATCTGATGCTACAGATTGTGAAGTTCTTGAATGACAATGGCGCACCTTTCACAGTGAACATCTACCCTTTCATCAGCCTCTACGCTGACCCCAATTTCCCTGTTGACTATGCCTTCTTTAACGGCTACCAGCCTGCTATAAATGACAATGGAAGAAACTACGACAACGTGTTTGATGCTAACCACGACACTTTGGTGTGGGCACTGCAGAAGAATGGCTTCGGAAACTTGCCTATAATTGTAGGGGAAATTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAAAGTGCACAACGTTTCAACCAAGGTTTCATGTCACGTTACATGTCTGGAAAAGGGACCCCGATGAGGCCTAGTCCTATAGATGCTTATTTGTTCAGTCTGATAGATGAAGATGCGAAAAGCATTCAGCCAGGGAACTTTGAGCGTCATTGGGGGATGTTTTACTTGGATGGACAACCAAAATACCAACTTAATCTTGGGTCTGCAAGAGGTAATGGATTAGTGGGTGCTGAAGGGGTTGATCACTTGGCTAAAAAGTGGTGCGTTTTGAAACCTTCAGCAAACCTTAACGATGATCAAGTGGCACCTAGTGTGGCCTATGCTTGTCAAAATGCTGATTGCACTAGTCTTGGGTATGGAACTTCTTGTGGCAATTTGGATGTGCATGGTAACATTTCTTATGCGTTTAACAGTTACTATCAGGTCAATGACCAGATGGACAGTGCCTGCAAATTCCCTGGCCTTTCTATGGTCACTGACAAAGATCCTTCTGTTGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCTGCTGTGCAACATGGAAAAGTTGGATCTCTATCCATAGTGTTGTGTTCTTTTGTAATTTTCCTATGTTGTAATCTTTTGTTTTGA 1458 0.4472 MGGGNFGRCDFVVVVVLVVLVGSVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPGILDALKKSGIQVMVGIPNDMLYTLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNRTYETTTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPDINNLMLQIVKFLNDNGAPFTVNIYPFISLYADPNFPVDYAFFNGYQPAINDNGRNYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQSAQRFNQGFMSRYMSGKGTPMRPSPIDAYLFSLIDEDAKSIQPGNFERHWGMFYLDGQPKYQLNLGSARGNGLVGAEGVDHLAKKWCVLKPSANLNDDQVAPSVAYACQNADCTSLGYGTSCGNLDVHGNISYAFNSYYQVNDQMDSACKFPGLSMVTDKDPSVGDCKFRIMIQTDSAVQHGKVGSLSIVLCSFVIFLCCNLLF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1127 485 Pfam X8 domain 366 436 IPR012946 -
Vra5g1127 485 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Vra5g1127 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 13 460 IPR044965 GO:0004553|GO:0005975
Vra5g1127 485 Gene3D Glycosidases 26 352 - -
Vra5g1127 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 13 460 - -
Vra5g1127 485 SMART X8_cls 366 450 IPR012946 -
Vra5g1127 485 Pfam Glycosyl hydrolases family 17 27 345 IPR000490 GO:0004553|GO:0005975
Vra5g1127 485 Gene3D - 362 463 - -
Vra5g1127 485 SUPERFAMILY (Trans)glycosidases 27 345 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1127 Vra-Chr5 17734182 17738163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1127 11 481 Glycoside Hydrolase AT4G31140 68.153 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1127 K19893 - gmx:100796552 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1127 5 17734182 17738163 Vra6g1519 6 30086252 30089522 PCT