Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1509 ATGACTAGACCAACAACTCGAAATAAAAATAAAAGGCAGAAACATGAGGATGATGATGACATTTCTGAAATATGGAGGAAAATTCATAAAACAGGAGCAGTGACTGAAGATGATATGAGCCAACTATATATGATTTGGAAACCCGTCTGTTCAGGCTGCCGTGTTAATACTAAAGACAACCCAAATTGCTTCTGTGCCTTGGTTCCTCCTCCAAATGGTACCCGGAAGTCTGGTTTATGGCAGAAGATGTCTGACTTTCTTGGAAGTCTTGGCCCTGATCCGACAACAGATCTTCGTGCTTCTGATTGTTCACCTGCTGGTTTGACAAATCTTGGTGCAACATGTTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATATTTTCGACAAGGCATATTTTCTGTAGAACCTGATCTTTTACAGCAACAACCAGTGTTAGACCAACTGACTCGGATTTTTGTACAATTGTATGCTAGTAAAAAGGCTTTCGTAGATTCTTCCCCATTTGTTAAAACACTGGAGTTAGACAATGAAGTTCAGCAGGATAGCCATGAATTCCTGACATTGCTTTTATCATTACTTGAGACTTGTTTGAGCCATTCCAAAATTGCTAAAGCAAGAACAATTGTTCAAGATCTTTTCCGAGGGAGCGTGTCTCATGTGACAACGTGTTCGCAATGTGGAAGAGAATCTGAAGCTTCTTACAAAATGGAAGACTTCTATGGGATAGAGTTGAATATCAAGGGATTGAAATGTTTAGATGAGAGCTTAGATGATTACCTTGCCATTGAAGAGCTCCATGGAGATAATCAATATTTTTGTGGGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCCGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAACACAATGAAGAAGAAAGTTACTTCTGCATTTTCATTTCCAGCTAAACTTGATATGTGTGATAGATTGTCTGAGCCATCTCAAAATGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAGGGCACTGCTGTTAATAGTGGTCATTACATTGCCCATATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGGAGGTTACTAACTTGGGTTGTCATCCATTTGGAGAAGGAGCTTCATCTTTTACTTCTAAATCTGTTAAGATGGACGCACTTAATTCTAATTGCTCTGAAGCAATGCTGGCTGACGGTAATGGTTTAGATGCCCCTCATTCACAATCTTCACTTGTGGAGACATTTACATCTGATGAGGCATACATGTTGATGTACCATCTTAGGCATAGCAAAAATGTTGGTGAAAAGGGGGACGTGGTTTATGGCACTAACTTTAAAGAAGCAGATTGCAATGCAGTTACTGCACAAGACAATGCTTGTTTCCCTTCTTATCTTGGTGACGAGATTCAAAATTTTAATGCCACATATCTTGATTCTTGCAACCAGTACAAACACAGGAAAGAGTTAGGACTAAGTTGTATCAATGAGAGGAGACAAGAAGTTCGATCTATTTTAGCTGAATCTCCTGCCCAACCACAAGAGCAACCGTACTATTGGATCTCTAGTGAATGGCTTCGCCAGTGGGCTGACTCTATTGTTCCGACTGTTCTTGACAATACACCTATCCAATGTTCACATGGGAAAGTTCCGGTGTCTAAGGCTACCTCAATGAAGCGATTGTCTTCTAAAGCTTGGGATAAATTATTGACTAAGTATGGTGGGGGGCCAACTCTTTCTCACAATGACTGCTGTTGGGATTGTCTGATAGAAGGGTCACATAATGTGGTGTCAGCTGACTCCTATCGGGATCAAAGAGAATCATTGAAGCAATTTGCACGAGCTTTTGTCAATGGAAATCATGAAGATGGAATGTACTATGTGTCTAGACCATGGCTGCAGCAATGGTTGAAAAGAAAAGTTGGTGATGCTCCCTCTGAAGCTGATGCTGGACCAACAACATCTATTAGTTGTCCACATGGACAACTTAGGCCTGATCAAGCTGTTGGGGCCAAGCGGTTGCTTGTTCCTGAGGGTTTCTGGTTTTTCTTATATAAAGATGCCATTACTGTAAAACCTGATGATCCTCTCGGTTGCCGTGCTTTTCCTGTAGGCTCAAGTGAATGTTTGCAATGCCATGATGAAATATCTAAAGAGGCTTGCTTTGAGGACTCTATGAGATTAGTAAAACAAATGCAAAGACAAAATCATGAGAAGTTATCTGTTGGTAAAAGTATGCCACTTTCTTTACATTGCAAGTATTTCTTAGTTCCTTCATCGTGGATTTTAAAATGGAGAAATTACTTGGCTGTCAAGAATTCTGATACACCTGAAACTTTGGATGGGGTAATTAATTCACTGATGTGTGAAAAGCACTCACAGCTCGTACAAAGGCCTCCTGAACTGATTTGTAGACGTGGGACTATAATCTCAAGAGAATCTTCTGTAGATGGCTTAACCATCATATCGGAGAATGATTGGAAGTGCTTCTGTCAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGAATGTTAATGATTTGGAAGATGCTTTGAACGGATCCTGCAAAGATATGCCTATATGTGAGAATCAACTTGATCCTTTGGATAAAGTGAATAATGGAAGTGGGAATGGAGTGAATAGACAACTTGTGATTAAGACTAGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCGTTGAGTTATTGCAGAAACTTAACTATTGCGATAAGGACATTAGTGTAATTCTTGTCCAAGGAAAGGAGGTCCCAAAATCTGTCTTGGATGCTGCAAAGCGTTTTGTTGAAACAGATAGGAGGGTTTCTAAACGTTCTCGGAATATGAAAAAAGAGAGTTCAATTAGCCTTAAAGTTTCTGCTTCAACATCAATTTACCAACTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACAAAAAGGCGATAGGAGAATTGATGTTGATAACGAAAATACTACGCTTGTAGATGTTAATATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTCAGATCCATGAAAATCGAGATATTGCAGAAGAACTTTGTAACGAGGTAATGGAAACGCAGCATACCGAGACAGGATTTCGTGGAACACTCTTGACGTCAAATTTTTCATCTCAGGTGGTTTAG 3246 0.3962 MTRPTTRNKNKRQKHEDDDDISEIWRKIHKTGAVTEDDMSQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGTRKSGLWQKMSDFLGSLGPDPTTDLRASDCSPAGLTNLGATCYANSILQCLYMNKYFRQGIFSVEPDLLQQQPVLDQLTRIFVQLYASKKAFVDSSPFVKTLELDNEVQQDSHEFLTLLLSLLETCLSHSKIAKARTIVQDLFRGSVSHVTTCSQCGRESEASYKMEDFYGIELNIKGLKCLDESLDDYLAIEELHGDNQYFCGSCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTMKKKVTSAFSFPAKLDMCDRLSEPSQNELIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEEVTNLGCHPFGEGASSFTSKSVKMDALNSNCSEAMLADGNGLDAPHSQSSLVETFTSDEAYMLMYHLRHSKNVGEKGDVVYGTNFKEADCNAVTAQDNACFPSYLGDEIQNFNATYLDSCNQYKHRKELGLSCINERRQEVRSILAESPAQPQEQPYYWISSEWLRQWADSIVPTVLDNTPIQCSHGKVPVSKATSMKRLSSKAWDKLLTKYGGGPTLSHNDCCWDCLIEGSHNVVSADSYRDQRESLKQFARAFVNGNHEDGMYYVSRPWLQQWLKRKVGDAPSEADAGPTTSISCPHGQLRPDQAVGAKRLLVPEGFWFFLYKDAITVKPDDPLGCRAFPVGSSECLQCHDEISKEACFEDSMRLVKQMQRQNHEKLSVGKSMPLSLHCKYFLVPSSWILKWRNYLAVKNSDTPETLDGVINSLMCEKHSQLVQRPPELICRRGTIISRESSVDGLTIISENDWKCFCQEWSGIETKGISARIENVNDLEDALNGSCKDMPICENQLDPLDKVNNGSGNGVNRQLVIKTSPEVCESCIGEKESVELLQKLNYCDKDISVILVQGKEVPKSVLDAAKRFVETDRRVSKRSRNMKKESSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGDRRIDVDNENTTLVDVNIFAGDQIIVRDSQIHENRDIAEELCNEVMETQHTETGFRGTLLTSNFSSQVV* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1509 1081 ProSiteProfiles DUSP domain profile. 618 721 IPR006615 GO:0004843
Vra6g1509 1081 Gene3D - 741 861 IPR035927 -
Vra6g1509 1081 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1051 - -
Vra6g1509 1081 SMART dusp 529 605 IPR006615 GO:0004843
Vra6g1509 1081 SUPERFAMILY Ubiquitin-like 973 1059 IPR029071 -
Vra6g1509 1081 CDD Ubl_USP48 964 1074 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vra6g1509 1081 CDD Peptidase_C19L 107 444 IPR033841 GO:0004843
Vra6g1509 1081 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 343 361 IPR018200 GO:0004843|GO:0006511
Vra6g1509 1081 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 106 447 IPR028889 -
Vra6g1509 1081 Pfam Ubiquitin carboxyl-terminal hydrolase 107 444 IPR001394 GO:0004843|GO:0016579
Vra6g1509 1081 Gene3D - 971 1047 - -
Vra6g1509 1081 SUPERFAMILY Cysteine proteinases 104 448 IPR038765 -
Vra6g1509 1081 Gene3D - 504 601 IPR035927 -
Vra6g1509 1081 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1051 - -
Vra6g1509 1081 SUPERFAMILY DUSP-like 515 603 IPR035927 -
Vra6g1509 1081 Gene3D Cysteine proteinases 93 447 - -
Vra6g1509 1081 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 107 122 IPR018200 GO:0004843|GO:0006511
Vra6g1509 1081 ProSiteProfiles DUSP domain profile. 511 603 IPR006615 GO:0004843
Vra6g1509 1081 ProSiteProfiles DUSP domain profile. 746 864 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1509 Vra-Chr6 29952697 29962721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1509 104 384 Miscellaneous Gene Families AT4G31670 29.195 9.58e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1509 - K11858 gmx:100795556 1828.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1509 6 29952697 29962721 Vra5g1125 5 17701334 17711573 PCT