Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1125 ATGCTTCCTCAAAGGAATAGGTTGTATTTGTACTGTAGAATGAGTAGACCATCAACACGAGGTAAAAATAAAAGACACAGACAAGGGGATGATGGCAACGGAACTGTGGAAATATGGAGGAAAATTCACAATAGTGGTGTGGTAACTCATGATGATATGAATAAGTTATATATGATCTGGAAGCCAGTTTGTTCAGGATGTCGCGTCAATAGCAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCTCCTCCAAATGGAACACGAAAATCTGGCTTGTGGCAAAAGATGTCCGATTTTCTTGAAGGTCTTGGCCATGATCCGAATAAGGATCTACGGGCATCTGCTAATTCTCCCGCAGGTCTCACAAATCTTGGCGCAACATGCTATGCCAACAGTATACTTCAGTGTTTGTATATGAATCAATCTTTTAGAGAAGGCATCTTTTCTGTAGAACAAGATGTCTTACAACAACAGCCTGTGCTGGATCAGCTGACCCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTTATAGATTCTTCTCCATTTGTAAGAACCCTGGAATTAGATAATGGAGTTCAGCAGGATAGTCATGAGTTTTTAACTTTGCTTCTCTCTTTGCTCGAGGGCTGTCTCAATCATTCGAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAAAGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAGATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGACGAGAGTTTAGATGAATATCTCACTGTTGAAGAGCTTAATGGAGAAAATCAATATTTTTGTGAGTCATGTAAAGGAAGAGTTGATGCTACTCGCAGCATCAAGCTGCGGACATTGCCCAAAGTTCTTAATTTTCAACTTAAACGATACATCTTCCTTCCTAAGACTACAACAAAGAAGAAAGTTAATTCTGCTTTCTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCAGAGTTGTCTGAGTTTGATTTGGTGTATGATCTGTCAGCTGTATTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCACATATTAAAGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGTGAAGGGTCTTCAAATTCTACCTCTAAATCCATCAAGAATGAGGCAATTAATGGAAATGGTTTGAATGCCTCTCATTTACAATCTACACGTCTGGAAACATTTTTGTCTAGTGATGCATACATGTTGATGTACCATCTTAAACATACGAAAAATGTAGGTGAAAGTGGGAGTGTAATTTCTGGAGCTAGGCATAATGAAAGAGAGGGTGTTGAAGTTGCTTTGCAAAATGGCGCTTCTCTTCCGTTTCATATTTATGATGAAATTCAAAATTTTAACGCCTCATATGATGAGGTTTGTCAGCAGTACAGCAAGATGAAAGAGTTCGAATTGGGTCGTATTACTGGGAGGAGACAGGAGGTTCGATCTGTTTTAGCTGAGGCTCCTGTTCAACCTTTGGAGCAACCATTTTACTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTGTTCCAATTCCTCTTGACAACTCACCTGTTCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTTCCTCAATGAAGCGGTTGTCTGCCAAAGCATGGGATATGTTGTTCTCCAAGTATGGTGGGGGGCCCGCATTATCTCATGATGACCACTGTTTGGATTGCCTGATTCATGGGGCTAAGACCGTGGTTTCAGCTGACTCCTACCGGGATAGAAGAGATTCAATGAAATCACTTGCACGGGATATTCTAGATGGAAACTGCCCGGATGGAAAGTTTTACATTTCCAGACATTGGTTGCAGCAATGGTGGAAAAGAAAAGTTCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACGGCAGCCATTAGTTGTCCACATGATCAACTGCTGCCAGAGCAAGCTCCCGGTGCTAAGCGTGTGCTTATTCCTGAGAATTTTTGGCTCTTCTTATATGAAGACGCCAAGTCTGTGAAGCCTGGTGATCCTTTGGGTGGCCCAACATTTTCTTCAGATTCTGAACAGTGTTCCCTATGCAGTAATGAATTATCAGAAGTAGCATGCTTTGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAGAATCATGAGAAATTGTTCCAGGCTAAAAGTCTGCCACTTTCTCTAAACTGCAAGTATTTCTTGGTGCCTTCATCATGGATTTCAAAATGGAGAAATTACATCAATCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGTGCAATTGATTCATTGTTATGTGAAAAGCACTCACAGCTTCTTGAAAGACCTCCGGAGTTGGTTTTCAGACGCGGTGCCATAATCCAGAAGGAGTCTTCTGTCGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAACACTTATGTGAAGAATGGGGTGGTATTGAGACTAAAGGAATATCTGCAACTATTGATTATACTAGTAATCCAGACAATGTTTTGGCTGGACCCAGTGAAGAAATGCTGACATGCAAGGATCAGTTGGGCACAGCAGATAAAATGAATTATGAAAATGGAGCTGGACTAATCTTCATCAAGACTTGTCCTGAGGTTTGTGAAAATTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAGCTTAATTATTCCAACGAGGACATATGTGTTATTCTTGTCCGTGGTAAGGAGGTACCAAGATCAATGTTAGAAGCTTCAAAGGGGTTTGTTGAAACCGATCGTCGAGTTTCCAAGCGTGCCCGGAAGACTAAAAACGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACAACTCTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTTAAGGAAAACCAAATACTGCATAAGGGTGATAGGATAATTGATAGTGATAATGAAGATGCTACCCTCGTGGATGTGAACATATTTGCTGGAGATCAGATTATAGTGAGAGACTCTGAGATCCACGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAAAGGATCTGCAGCATACCGAGGAAGGGTTCCGTGGAACACTTCTTACAGCAAATGTTTCATCTCAGGTTGTTTAA 3255 0.4098 MLPQRNRLYLYCRMSRPSTRGKNKRHRQGDDGNGTVEIWRKIHNSGVVTHDDMNKLYMIWKPVCSGCRVNSKDNPNCFCALVPPPNGTRKSGLWQKMSDFLEGLGHDPNKDLRASANSPAGLTNLGATCYANSILQCLYMNQSFREGIFSVEQDVLQQQPVLDQLTRLFVQLHISKMAFIDSSPFVRTLELDNGVQQDSHEFLTLLLSLLEGCLNHSKVPKARTIVQDLFRGSVSHVTKCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELNGENQYFCESCKGRVDATRSIKLRTLPKVLNFQLKRYIFLPKTTTKKKVNSAFSFPAELDMRHRMSELSEFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSNSTSKSIKNEAINGNGLNASHLQSTRLETFLSSDAYMLMYHLKHTKNVGESGSVISGARHNEREGVEVALQNGASLPFHIYDEIQNFNASYDEVCQQYSKMKEFELGRITGRRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNIVPIPLDNSPVQCSHGKVPVSKVSSMKRLSAKAWDMLFSKYGGGPALSHDDHCLDCLIHGAKTVVSADSYRDRRDSMKSLARDILDGNCPDGKFYISRHWLQQWWKRKVLDAPSEADAGPTAAISCPHDQLLPEQAPGAKRVLIPENFWLFLYEDAKSVKPGDPLGGPTFSSDSEQCSLCSNELSEVACFEDSLRLVKQKQRQNHEKLFQAKSLPLSLNCKYFLVPSSWISKWRNYINPTLKNSDKPETLDGAIDSLLCEKHSQLLERPPELVFRRGAIIQKESSVGGLTIVSENDWKHLCEEWGGIETKGISATIDYTSNPDNVLAGPSEEMLTCKDQLGTADKMNYENGAGLIFIKTCPEVCENCIGERESCELMQKLNYSNEDICVILVRGKEVPRSMLEASKGFVETDRRVSKRARKTKNGSSISLKVSASTTLYQLKMMIWESFGVVKENQILHKGDRIIDSDNEDATLVDVNIFAGDQIIVRDSEIHENRDIADELCDDKKDLQHTEEGFRGTLLTANVSSQVV* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1125 1084 SUPERFAMILY Ubiquitin-like 975 1043 IPR029071 -
Vra5g1125 1084 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 121 136 IPR018200 GO:0004843|GO:0006511
Vra5g1125 1084 Pfam Ubiquitin carboxyl-terminal hydrolase 121 448 IPR001394 GO:0004843|GO:0016579
Vra5g1125 1084 Gene3D - 747 866 IPR035927 -
Vra5g1125 1084 Gene3D - 510 606 IPR035927 -
Vra5g1125 1084 ProSiteProfiles DUSP domain profile. 750 870 IPR006615 GO:0004843
Vra5g1125 1084 Gene3D Cysteine proteinases 105 451 - -
Vra5g1125 1084 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 15 1054 - -
Vra5g1125 1084 CDD Ubl_USP48 974 1075 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vra5g1125 1084 SUPERFAMILY DUSP-like 521 607 IPR035927 -
Vra5g1125 1084 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 357 375 IPR018200 GO:0004843|GO:0006511
Vra5g1125 1084 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 1054 - -
Vra5g1125 1084 SMART dusp 533 609 IPR006615 GO:0004843
Vra5g1125 1084 ProSiteProfiles DUSP domain profile. 515 607 IPR006615 GO:0004843
Vra5g1125 1084 SUPERFAMILY Cysteine proteinases 118 452 IPR038765 -
Vra5g1125 1084 ProSiteProfiles DUSP domain profile. 622 729 IPR006615 GO:0004843
Vra5g1125 1084 Gene3D - 973 1044 - -
Vra5g1125 1084 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 120 451 IPR028889 -
Vra5g1125 1084 CDD Peptidase_C19L 121 448 IPR033841 GO:0004843
Vra5g1125 1084 ProSiteProfiles Ubiquitin domain profile. 975 1041 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1125 Vra-Chr5 17701334 17711573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1125 118 448 Miscellaneous Gene Families AT4G31670 28.490 2.98e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1125 - K11858 gmx:100815770 1904.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1509 6 29952697 29962721 Vra5g1125 5 17701334 17711573 PCT