Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1471 ATGGCGACCGCGTTGCTGGACGATGAAACTGCGAAGAAAGTCGTACGGCAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCACAGACAGATTTTTGAAGAAAACCGTCAGTGAAAGCGAAGATGGCATGGTTAGTTTGGCTCTTATTTGTTCTTTTAATCGGATGCGAAAGCACCTCAAACTAGAGGAAGTTAAGTCGGCTGAGGTGCCCGATGATACTGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGAGTCTCAGAAGATGGGAGCAAAGTTGGCAGGTCAACTAAGCTTCTGAAGCCAGAAGAGGTAATCGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATATGATGTTAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAACAGTGTGCGGTTGCCTCGCCATGTTGGAGACAAAAGGATTTTTTGTGGCACTGCTCTTGTTGAGTTTTCATCAGATGAAGAAATGAAAATTTTTTTGAGGCAAAGTCATGTCTATGCGGGGGCTGAGCTAGAGTTAAAGCCAAAGAAGGACTTTGACGTGCAGAGAGAGGAAGAATTAAAAGAGCAAGAAAAATTTCGTCCACCTGGGGGTGTAGATCACCAAAATAACATAAGTACAGAAGCAGACTACCCTAAAGGCTTACTTTTAGCCTTCAAGCTAAAGACTATTTCTGATGAAGTTCCTTCAGAACAAAATAACCCTGAACAACAAACCAATGATGCTGATGATATCTCCAAAACCGATCAACAAAATCCATCTGAAATTGCTGCTGAGGAAAGTGGTAAAAAGATATCAGAAAATGACGAGAATGATAAAGAAAACAGTGAGGTGAGTGAAGGAAAAGGGACTGAGGGTGAGGAAAAGAGTAAAGAAACTGATGGAAAAAATTCTGCTACTCCGGACAAGGACAACAAGTTTGTTGTCTTACGAGGGGATTTGAAAGTTGTCTTTGAGAAGTTTGGTACCGTGAAGTACGTTGATTTCAAGGTTGGAGAAGAGTCAGGATATATCCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCTGCTGTTCTTTCTGAAAAGGAGGGCTTAGTTGTCAAGAATTTTATTGCTACTCTGGATCCAGTGACTGGTGAGGCGGAGAGAGAGTACTGGAGCCTGCTTCGTGGTAATCAGGAAAAACAGAGAGGATTTAAGAATAACCGAGGAAGGGGAAGAAAGCATGGGAGAGGGGGTAAATTCAACAATGAATCTGCATTAAATCGGCCAAATAAAGTTAGAAAGTTTTAA 1326 0.4238 MATALLDDETAKKVVRQVEFYFSDSNLPTDRFLKKTVSESEDGMVSLALICSFNRMRKHLKLEEVKSAEVPDDTVKAVAQALKDSALVRVSEDGSKVGRSTKLLKPEEVIEQVEIRTIAASPFQYDVKLEDVEAFFGQYAKVNSVRLPRHVGDKRIFCGTALVEFSSDEEMKIFLRQSHVYAGAELELKPKKDFDVQREEELKEQEKFRPPGGVDHQNNISTEADYPKGLLLAFKLKTISDEVPSEQNNPEQQTNDADDISKTDQQNPSEIAAEESGKKISENDENDKENSEVSEGKGTEGEEKSKETDGKNSATPDKDNKFVVLRGDLKVVFEKFGTVKYVDFKVGEESGYIRFEEPEGAQKARAAAVLSEKEGLVVKNFIATLDPVTGEAEREYWSLLRGNQEKQRGFKNNRGRGRKHGRGGKFNNESALNRPNKVRKF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1471 441 MobiDBLite consensus disorder prediction 407 441 - -
Vra6g1471 441 Gene3D - 6 106 IPR036388 -
Vra6g1471 441 Gene3D - 314 416 IPR012677 -
Vra6g1471 441 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Vra6g1471 441 MobiDBLite consensus disorder prediction 243 319 - -
Vra6g1471 441 SUPERFAMILY RNA-binding domain, RBD 108 195 IPR035979 GO:0003676
Vra6g1471 441 CDD LA_like_plant 10 99 - -
Vra6g1471 441 SUPERFAMILY RNA-binding domain, RBD 326 405 IPR035979 GO:0003676
Vra6g1471 441 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Vra6g1471 441 Pfam La domain 14 83 IPR006630 -
Vra6g1471 441 ProSiteProfiles xRRM domain profile. 308 427 IPR014886 GO:0003723
Vra6g1471 441 SMART la 8 100 IPR006630 -
Vra6g1471 441 MobiDBLite consensus disorder prediction 275 319 - -
Vra6g1471 441 Pfam RNA binding motif 325 416 IPR014886 GO:0003723
Vra6g1471 441 MobiDBLite consensus disorder prediction 243 272 - -
Vra6g1471 441 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra6g1471 441 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra6g1471 441 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra6g1471 441 PANTHER BNAANNG34180D PROTEIN 3 437 - -
Vra6g1471 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Vra6g1471 441 MobiDBLite consensus disorder prediction 195 221 - -
Vra6g1471 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 175 IPR000504 GO:0003723
Vra6g1471 441 MobiDBLite consensus disorder prediction 195 211 - -
Vra6g1471 441 PANTHER LUPUS LA PROTEIN-RELATED 3 437 IPR045180 -
Vra6g1471 441 SMART rrm1_1 321 379 IPR000504 GO:0003723
Vra6g1471 441 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vra6g1471 441 CDD RRM2_La_like 324 385 - -
Vra6g1471 441 Gene3D - 109 208 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1471 Vra-Chr6 29181489 29185822 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1471 K11090 - gmx:100792984 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1471 6 29181489 29185822 Vra6g1471 6 29181489 29185822 ECH
Vra6g1471 6 29181489 29185822 Vra5g1061 5 16996378 16999859 PCT