Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1061 ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGACAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCTTGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGGATGCGTAAGCACCTTAGTTTGGGTGATGTGAATCCCGATGGAGTGCCTCAAGATATCGTGAATGCTGTTGCGCAAACTTTGAGAAGTTCGGCTTCACTCAAGGTCTCTGAAGATGGGAATAAAGTTGGCAGAACAACAGAACTTCCGAAACCAGAAGTCGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAACTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCCCATCATGTGCGAGACAAAAAGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAAGTTATGAAAGAGAAATTTGTGTATGCTGGGGCTGAGTTAGAATTAAAACTCAAGAAGGACTTTGACGCAGAGAGGGAAAAAGAATTAGAAGATTTTGAAAAATCTCGTCCACCTTTGGGTTCACACCAGAATAACTCAAATGAAGAAGATGAAAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGTATTTCAGAAGAAATTCCTTCAGACCAAAGCGCTGCTGATCAACATAATAGTGCTGTCCCCAAAACAGGTGAAAAGCCTGAAATTGCCGCTGGAGAAAATGATCCAAAGGTGGATGAAGAAAACAATGAGACAAAAGAGGCAAAGGAAACTGGAAGTCAAGACAACAATCAGATGAAAGAAGCAAAGGAAACTGGAAATCAAGACGACAACAATGAGATGGGAGAATCCAAGGAAACTGGAAGTCAAGACAACAGTGAGATGAAAGAAGAAAAGGAAACTGAAAGCAAAGAAAAGAATGAAACAAAAGAAACAAATGAAACCGAAAGAGCAGAAAAGAAGCCACAGGCCGGTGAAAAATTTTCTGCTGCTGCTTACAAGGACAACATGGATGTAGTCTCACGTGAGGATTTAAGGAGTGTCTTCGAAAACTTTGGTATAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATTCGATTTGAAGAAACGGAAGCTTCTCAGAAAGCTCGCGCTGCTGCAGTTATTTCAGAAAAAGGCGGCTTGGTGGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAGCCGTCTTCGTGGTAATCAAGGCAAGCACCGAGAATTTAAGAATAAGCAAGGAAGGGGAGGATGGTATGGTAGAGGGAGCAAACATGCACGCTTTAGAGAGAATGGTTCTAGAGTTGGTCGCGCAAATAAGACTCAGAAAACTGGTGCTGCATAA 1482 0.4109 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGLISLALICSFNRMRKHLSLGDVNPDGVPQDIVNAVAQTLRSSASLKVSEDGNKVGRTTELPKPEVVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVRDKKFFCGTALVEFSSDEEVEKVMKEKFVYAGAELELKLKKDFDAEREKELEDFEKSRPPLGSHQNNSNEEDESYPKGLIIAFKLKSISEEIPSDQSAADQHNSAVPKTGEKPEIAAGENDPKVDEENNETKEAKETGSQDNNQMKEAKETGNQDDNNEMGESKETGSQDNSEMKEEKETESKEKNETKETNETERAEKKPQAGEKFSAAAYKDNMDVVSREDLRSVFENFGIVKYIDFKIGEVSGYIRFEETEASQKARAAAVISEKGGLVVKNFIAILDPVTGEAEKEYWSRLRGNQGKHREFKNKQGRGGWYGRGSKHARFRENGSRVGRANKTQKTGAA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1061 493 CDD RRM2_La_like 367 430 - -
Vra5g1061 493 ProSiteProfiles xRRM domain profile. 348 478 IPR014886 GO:0003723
Vra5g1061 493 MobiDBLite consensus disorder prediction 264 353 - -
Vra5g1061 493 MobiDBLite consensus disorder prediction 200 225 - -
Vra5g1061 493 Pfam RNA binding motif 369 461 IPR014886 GO:0003723
Vra5g1061 493 SUPERFAMILY "Winged helix" DNA-binding domain 6 107 IPR036390 -
Vra5g1061 493 SMART la 8 100 IPR006630 -
Vra5g1061 493 SUPERFAMILY RNA-binding domain, RBD 369 454 IPR035979 GO:0003676
Vra5g1061 493 PANTHER LUPUS LA PROTEIN-RELATED 4 492 IPR045180 -
Vra5g1061 493 Coils Coil 321 348 - -
Vra5g1061 493 MobiDBLite consensus disorder prediction 454 493 - -
Vra5g1061 493 CDD LA_like_plant 10 99 - -
Vra5g1061 493 Pfam La domain 14 83 IPR006630 -
Vra5g1061 493 PANTHER OS02G0610400 PROTEIN 4 492 - -
Vra5g1061 493 Gene3D - 337 461 IPR012677 -
Vra5g1061 493 SUPERFAMILY RNA-binding domain, RBD 107 192 IPR035979 GO:0003676
Vra5g1061 493 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g1061 493 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g1061 493 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vra5g1061 493 MobiDBLite consensus disorder prediction 242 358 - -
Vra5g1061 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Vra5g1061 493 Gene3D - 108 205 IPR012677 -
Vra5g1061 493 SMART rrm1_1 360 424 IPR000504 GO:0003723
Vra5g1061 493 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vra5g1061 493 Gene3D - 2 104 IPR036388 -
Vra5g1061 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Vra5g1061 493 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1061 Vra-Chr5 16996378 16999859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1061 K11090 - gmx:100803099 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1061 5 16996378 16999859 Vra5g1061 5 16996378 16999859 ECH
Vra6g1471 6 29181489 29185822 Vra5g1061 5 16996378 16999859 PCT