Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1409 ATGTCTCCCCTAACGCGCAGTGATTTGCTGAGGATTTTTGAGAAAGTGGACATGAATGGAGATGGGTTTTTGAGCCTTGAGGAGCTGAAAATGCTGCTAGAGAAGACGGGTTTCAACTACAGTATGGAAGAGTTGGAGTCTCTGGTGGGAAAGAAGAAGCTTGACTTGAGTGAGTTCTTGTTGTTTTATGAATCTATACTGAAGCAGAAAAATGGGGAAGAGGAAGGGAATGATGATGATAAGGTTGAGGAGGTGGAGAGGGACCTGGTGAAGACTTTCAAGGTGTTTGATTTGGATGGAGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGAAAGGTGTGGCAAGGATAGCACATCCATGATTTGCTCCTATGACACTAATTTTGATGGCAAACTTGATTTTCAGGAATTCAAGGACATGATGCTTCTCACAACTTGA 468 0.4359 MSPLTRSDLLRIFEKVDMNGDGFLSLEELKMLLEKTGFNYSMEELESLVGKKKLDLSEFLLFYESILKQKNGEEEGNDDDKVEEVERDLVKTFKVFDLDGDGFITSQELECVLKRLGMWDERCGKDSTSMICSYDTNFDGKLDFQEFKDMMLLTT* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1409 155 Gene3D - 120 155 - -
Vra6g1409 155 Gene3D - 78 119 - -
Vra6g1409 155 SMART efh_1 88 116 IPR002048 GO:0005509
Vra6g1409 155 SMART efh_1 8 36 IPR002048 GO:0005509
Vra6g1409 155 SMART efh_1 126 154 IPR002048 GO:0005509
Vra6g1409 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 154 - -
Vra6g1409 155 Gene3D - 5 65 - -
Vra6g1409 155 SUPERFAMILY EF-hand 6 152 IPR011992 -
Vra6g1409 155 CDD EFh 88 151 IPR002048 GO:0005509
Vra6g1409 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vra6g1409 155 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vra6g1409 155 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 154 - -
Vra6g1409 155 ProSiteProfiles EF-hand calcium-binding domain profile. 122 155 IPR002048 GO:0005509
Vra6g1409 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vra6g1409 155 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Vra6g1409 155 Pfam EF hand 12 32 IPR002048 GO:0005509
Vra6g1409 155 Pfam EF hand 134 151 IPR002048 GO:0005509
Vra6g1409 155 Pfam EF hand 89 110 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1409 Vra-Chr6 27748803 27749563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1409 2 152 EF-hand Containing Proteins AT1G21550 41.830 7.95e-32 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1409 K13448 - gmx:100500561 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1409 6 27748803 27749563 Vra6g1409 6 27748803 27749563 ECH
Vra6g1409 6 27748803 27749563 Vra5g0740 5 12637217 12638054 PCT