Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0740 ATGTGTCTCCTAACGCAGTCTGATTTGAAGCGTATTTTTGAGAAAGTGGATGTCAATGGCGATGGGTTGCTGAGCCTTGAGGAGCTCAATCGGATGCTTGAAATCACAGGCAATTGCCAGTACACCATACAAGAGTTGGAATCGCTGGTGGAAACGAAAAGCCTTGGTTTCAGCGAGTTCTTGTTCTTTTACAACTCCATTTCGGAGCAGCAGAATGGAGAAAGTAGAGGAAGTTGTGAGGCAGAGGAATTGGAGAGCGACCTCGTCAAAACCTTCAAGGTCTTTGACTTGGATGGCGATGGCTTCATCACCAGCCATGAGCTTGAGTCTGTCTTGAAAAGGCTTGGCATGTGGGATGACACCAACTGCAATGATTCTACAACCATGATTCGATTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAATTTAAGAATATGATGTTGGTTTCCAGAGCCTGA 468 0.453 MCLLTQSDLKRIFEKVDVNGDGLLSLEELNRMLEITGNCQYTIQELESLVETKSLGFSEFLFFYNSISEQQNGESRGSCEAEELESDLVKTFKVFDLDGDGFITSHELESVLKRLGMWDDTNCNDSTTMIRFYDTNFDGRLDFQEFKNMMLVSRA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0740 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Vra5g0740 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vra5g0740 155 SMART efh_1 87 115 IPR002048 GO:0005509
Vra5g0740 155 SMART efh_1 125 153 IPR002048 GO:0005509
Vra5g0740 155 SMART efh_1 8 36 IPR002048 GO:0005509
Vra5g0740 155 Pfam EF hand 88 111 IPR002048 GO:0005509
Vra5g0740 155 Pfam EF hand 131 150 IPR002048 GO:0005509
Vra5g0740 155 SUPERFAMILY EF-hand 7 151 IPR011992 -
Vra5g0740 155 Pfam EF hand 8 34 IPR002048 GO:0005509
Vra5g0740 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 154 - -
Vra5g0740 155 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 154 - -
Vra5g0740 155 CDD EFh 87 150 IPR002048 GO:0005509
Vra5g0740 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vra5g0740 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vra5g0740 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Vra5g0740 155 Gene3D - 76 154 - -
Vra5g0740 155 Gene3D - 3 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0740 Vra-Chr5 12637217 12638054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0740 4 151 EF-hand Containing Proteins AT1G21550 40.268 8.06e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0740 K13448 - gmx:100527117 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0740 5 12637217 12638054 Vra5g0740 5 12637217 12638054 ECH
Vra6g1409 6 27748803 27749563 Vra5g0740 5 12637217 12638054 PCT