Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1388 ATGTTGGAAAGCGATGCAGGCAGAACTTATCCAGAGGCATTTGAAGCCTCGAATGGCAAAATTCAACTAGCAGATTCCGATTCCTTTGACGATGATGGGCGTCCCAAAAGAACTGGAACTGTTTGGACTGCAAGTGCCCACATAATAACTGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCTGTTGCTCAGCTTGGTTGGGTTGCTGGTCCTGCTATAATGATTTTGTTCTCTGTTGTCACTTATTGCACCTCAATTCTTCTGGCTGTTTGTTACCGCACTGGTGACCAACTCACTGGCAAGAGAAACTACACCTACACTCAAGCTGTCAGATCATATCTAGGTGGAATGAATGTCAAGTTTTGTGCGCTGGTTCAGTATGCGAACCTTTTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCGGTTAAAAGGTCTAACTGCTATCATAATAGCGGAGGAAAAGATCCATGCAAAATGAACAGCAATGTTTACATGATTTCATTTGGAATTGCGGAAATTATTTTATCCCAAATTCCAGATTTTAACGAATTGTGGTGGCTCTCTATTGTGGCTGCTGTCATGTCTTTCACATACTCTATAATTGGACTTGGTCTTGGAATGACTAAAGTTATACAAAATGGAATGATTAAAGGAAGCTTAACTGGTGTAAGTATTGGTGCTGTCTCAGAAATCCAAAAAGTTTGGAGGACCTTCCAAGCTCTCGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATAGAAATTCAGGACACAATCAAATCACCTCCTGAAGAGTCAAAGACAATGTCGAAGGCTACTTTGTCGAGTGTCTTGGTGACAAGCATTTTCTATATTCTATGTGGTGGTTTTGGCTATGCAGCTTTTGGAGATTCAAGCCCTGGAAACCTGCTAACTGGTTTTGGCTTCTTTAACCCATATTGGCTCCTGGACATAGCCAATGTTGCCATTGTTGTCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTGTTCCAATTTATTGAAAACAACGCAGCACAAAAATTCCCAGACAATGATTTTATGAGCAAGGAATTTAAGGTAGCAATCTATGGTTTGAAACCCTTCAAGCTGAACCTTTTCCGGTTGGTTTGGAGGACAATTTTTGTGATCTTCTGCACTGTCATAGCAATGCTGCTTCCATTCTTCAATGACATTGTGGGGCTGATTGGAGCCATTGGATTTTGGCCACTGACTGTGTATTTCCCTGTGGAGATGTATATTGTTCAAGCTAAAGTACCAAAGTGGAGCACAAAATGGATATGCTTGCAGATGCTTAGTGCTACATGCTGCGTCATAACAATTGTAGCTGCAGTAGGTTCCATTGCTGGGATTCTTGATGATCTTAAAGTTTACAAGCCATTCACCACCAGTTACTAG 1452 0.4215 MLESDAGRTYPEAFEASNGKIQLADSDSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQLGWVAGPAIMILFSVVTYCTSILLAVCYRTGDQLTGKRNYTYTQAVRSYLGGMNVKFCALVQYANLFGVAIGYTIAASISMMAVKRSNCYHNSGGKDPCKMNSNVYMISFGIAEIILSQIPDFNELWWLSIVAAVMSFTYSIIGLGLGMTKVIQNGMIKGSLTGVSIGAVSEIQKVWRTFQALGNIAFAYSYSMILIEIQDTIKSPPEESKTMSKATLSSVLVTSIFYILCGGFGYAAFGDSSPGNLLTGFGFFNPYWLLDIANVAIVVHLVGAYQVYCQPLFQFIENNAAQKFPDNDFMSKEFKVAIYGLKPFKLNLFRLVWRTIFVIFCTVIAMLLPFFNDIVGLIGAIGFWPLTVYFPVEMYIVQAKVPKWSTKWICLQMLSATCCVITIVAAVGSIAGILDDLKVYKPFTTSY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1388 483 Pfam Transmembrane amino acid transporter protein 37 469 IPR013057 -
Vra6g1388 483 PANTHER OS05G0424000 PROTEIN-RELATED 12 477 - -
Vra6g1388 483 PANTHER AMINO ACID CARRIER 12 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1388 Vra-Chr6 27271346 27275775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1388 29 483 Organic Solute Cotransporters AT5G09220 72.588 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1388 K24917 - gmx:100775662 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1388 6 27271346 27275775 Vra6g1388 6 27271346 27275775 ECH
Vra5g0757 5 12931133 12934207 Vra6g1388 6 27271346 27275775 PCT