Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0757 ATGGTTGGCATGGATGGCCATGGCAGCAAGCATGATCAGCAAACATTTAACGTCTCCCTTGACATGCATCAACAAGGAGACTCTAAGTGTTTCGACGATGATGGTCGCCCCAAACGAACAGGAACAGTGTGGACAGCGAGCGCACACATAATAACCGCAGTGATAGGATCTGGAGTTCTTTCTTTGGCTTGGGCTATAGCTCAGCTTGGATGGATTGCTGGCCCTGCTGTTATGCTTCTTTTTTCTGCCATCACTTACTTCACTTCCCTTCTTCTCACTGATTGTTATCGTACCGGTGACCCTCTCACTGGCAAGAGAAACTACACTTACATGGATGCTATTCGTTCTAACTTTGGTGGCAACGGCTTTAAGGTCAAGATGTGTGGACTGGTTCAGTATGTTAACCTTTTTGGAATCTCCATTGGTTACACTATAGCGTCTTCCATTAGCATGATGGCAATCGAAAGATCTAATTGTTTCCACAAGAGCGGAGGGAAGAATCCATGTCATATGAACAGCAACGTGTACATGATTTCGTTTGGAATATTGGAGATTATTTTCTCTCAAATTCCAGGCTTTGATCAATTATGGTGGCTGTCCTTTGTAGCTGCTGTCATGTCATTCACATACTCCACCATTGGGCTAGGCCTTGGTATTGGAAAGGTCATTGAGAACAGAAAAGTGGGGGGAAGCTTAACCGGGATAACAGTTGGTTATGTGACTCAAACTAATAAAGTTTGGAGAACCATGCAAGCGCTTGGTGACATAGCATTTGCCTATTCATATTCCTTCGTCCTTATAGAAATTCAGGACACGGTGAAATCACCTCCATCGGCATCAAAAACAATGAAGAAGGCCTCTTTCGTCGGTGTTGCAGTCACCACCTTTTTCTACATGCTATGTGGCTGCTTTGGTTATGCTGCTTTTGGAGACTCAAGCCCTGGAAACCTTCTCACTGGTTTTGGCTTCTACAACCCATACTGGCTCCTTGACATTGCTAATGCTGCCATTGTGATCCACCTTGTTGGTTCATACCAAGTCTACAGCCAGCCCCTCTTTGCTTTCATTGAGAAAAACGTAGCACAGAGATTCCCAGATAGTTATTTTGTGAACAAAGACATTGAAATCTCAGTCCCTGGTTTCCATTCCTACAAGCTCAACCTCTTCCGATTGGTTTGGAGAACAGCATATGTTGTGGTAAGCACTTCAATAGCAATGCTGCTCCCATTCTTCAATGACGTAGGAGCGCTTATTGGAGCATTTGGATTTTGGCCCCTTACGGTGTATTTCCCAGTGGAAATGTATATTACTCAGAAGAGAATACCAAAGTGGAGCTCTAAATGGATCTGCCTCCAAACACTAAGCATTGCTTGCCTTTTGATGACCATAGGAGCTGGAGTTGGCTCTATTGCTGGGATTCTCATTGATCTTAAGACTTACAAGCCTTTCAAGACAAACTATTGA 1464 0.4399 MVGMDGHGSKHDQQTFNVSLDMHQQGDSKCFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSAITYFTSLLLTDCYRTGDPLTGKRNYTYMDAIRSNFGGNGFKVKMCGLVQYVNLFGISIGYTIASSISMMAIERSNCFHKSGGKNPCHMNSNVYMISFGILEIIFSQIPGFDQLWWLSFVAAVMSFTYSTIGLGLGIGKVIENRKVGGSLTGITVGYVTQTNKVWRTMQALGDIAFAYSYSFVLIEIQDTVKSPPSASKTMKKASFVGVAVTTFFYMLCGCFGYAAFGDSSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGSYQVYSQPLFAFIEKNVAQRFPDSYFVNKDIEISVPGFHSYKLNLFRLVWRTAYVVVSTSIAMLLPFFNDVGALIGAFGFWPLTVYFPVEMYITQKRIPKWSSKWICLQTLSIACLLMTIGAGVGSIAGILIDLKTYKPFKTNY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0757 487 PANTHER AMINO ACID CARRIER 10 481 - -
Vra5g0757 487 PANTHER OS05G0424000 PROTEIN-RELATED 10 481 - -
Vra5g0757 487 Pfam Transmembrane amino acid transporter protein 39 474 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0757 Vra-Chr5 12931133 12934207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0757 11 487 Organic Solute Cotransporters AT1G77380 72.746 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0757 K24917 - gmx:100779910 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0757 5 12931133 12934207 Vra5g0757 5 12931133 12934207 ECH
Vra5g0757 5 12931133 12934207 Vra6g1388 6 27271346 27275775 PCT