Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1381 ATGCCACCTTCTCCTTCCTTCCCTTCAGAGAACCGAACCAAATGGCGGAGGAAGAGGAAGCGAGAATCTCACAAACGCCACTCCAAGCGTCATGACGAAGATGACGAAGACAACGATTCCGATGACGACGACAACAACGACTCCGACGACCAGTTCCGCAGCCCTAACGCGCCGCCCAACACCGACCCGCGTGTCGAGATCGAGGTCGTCTCGCGCGATGGAGTCCAGATTTCACGCTTTCCGCCGGCTATCAGGCGCGCTGTTACCCGTCCTCATGCAGCGGTCACGGCGATTGCGGCTCTGGAGTTCGGCAGGGGACACTCCCAGCACGGCGTTCCGGTTCTCGAGAATGTGTCTCACGGCCAGCTTCAGGCGTCCTCGACTGTGACCGCTGATTGTCTTGGGGGCTCGAGCTTTGTCGCCACTCCTCCTCCAGTTATGAAAGGCTCTGGCGTTGTTAAGCGCTTTGGCACTAGGGCTCTAGTGGTTCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTAGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCACCAGATCATACCCCGGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGAAAGAGGATTACAGTCCCTAGTTGTCAGGTTTTGTCTGTTGGTGTTGGTACTGAAGATTTAACTCGAATTGTAAGGTTCCTTGATCAATGGGGAATTATCAATTACTGTGCTCAGGAGCCAAGACATGAGTATATGGACAATGATTCTTGCCTGACGGAGGACACTAGTGGTGCACTATGTGTGCCATCAGTGACTTTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATGTCAAACAATGCACAATACGAATATTTCTGATTTGGATGACACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCTCGTTCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCACGATGGGAGATTTGTTGCTGGTCATTCTAGTATAGATTTTATTACAGTGGATTCAACTACAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCGAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGAAAATTAGAAAACATCAATGTATCAAGTATTTCCTTGTCATCCAATATGAATAATCAAGAGGGTAATGGAAGATTGCATTGTTGCTCCAATGGGGATTCAGCAGGACCCATACATAACAACCAAGATTCTGATGACAGGCTTCCTTTTGCAAGTTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCACGCAGCATTAGCTGCATTGTCAGAGAATAATTCAGGGAGCGCGTCAGATATAGAAGCTCTGGAAAATGATAACAGGGCAAATTCAGAAAGCATAAATAATAGAAATGGTGGACATCATGGAATGGTTGCAAACTCGAATCAGAAAAATGTGATTCATTTGAATTCAGAGGACAAGTTAAAAGTACCTGGTTCATGTGCTCAAGATGATGCTGGGTCGACCCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCGAAAGCGGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAGGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTTGCTTCTGAACGGTCCCATGTTGTTTCAGCACGTCTTGGAAATGGTGGAACCACTCCTCCAATGAATGTATCAGGTGTTGGTCCTTCCATGATTAATAATAATAGCAACAGTAGGCAGCAAATGATTTCTCAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGGCTGTTTCTTCAAATTCGATGTTCAATGGCCCCAGTAATGTGCAGCCTGCTCCTAATCATTCGTTGTCGAGGCCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2334 0.4503 MPPSPSFPSENRTKWRRKRKRESHKRHSKRHDEDDEDNDSDDDDNNDSDDQFRSPNAPPNTDPRVEIEVVSRDGVQISRFPPAIRRAVTRPHAAVTAIAALEFGRGHSQHGVPVLENVSHGQLQASSTVTADCLGGSSFVATPPPVMKGSGVVKRFGTRALVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQVLSVGVGTEDLTRIVRFLDQWGIINYCAQEPRHEYMDNDSCLTEDTSGALCVPSVTLRSIDSLIEFDKPKCKFKADEIYSCQTMHNTNISDLDDTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVAGHSSIDFITVDSTTDYGDLDGDSWTDQETLLLLEAVEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSISLSSNMNNQEGNGRLHCCSNGDSAGPIHNNQDSDDRLPFASSGNPVMALVAFLASAVGPRVAATCAHAALAALSENNSGSASDIEALENDNRANSESINNRNGGHHGMVANSNQKNVIHLNSEDKLKVPGSCAQDDAGSTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTTPPMNVSGVGPSMINNNSNSRQQMISQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQAVSSNSMFNGPSNVQPAPNHSLSRPVSRTNSGLG* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1381 777 Gene3D - 167 254 IPR036388 -
Vra6g1381 777 Coils Coil 628 648 - -
Vra6g1381 777 Pfam SWIRM-associated region 1 596 669 IPR032451 -
Vra6g1381 777 MobiDBLite consensus disorder prediction 745 777 - -
Vra6g1381 777 Pfam SWIRM domain 164 250 IPR007526 GO:0005515
Vra6g1381 777 Gene3D - 383 433 - -
Vra6g1381 777 ProSiteProfiles SANT domain profile. 382 433 IPR017884 -
Vra6g1381 777 Coils Coil 513 533 - -
Vra6g1381 777 SUPERFAMILY Homeodomain-like 160 257 IPR009057 -
Vra6g1381 777 ProSiteProfiles Zinc finger ZZ-type profile. 324 378 IPR000433 GO:0008270
Vra6g1381 777 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 58 776 - -
Vra6g1381 777 SMART sant 383 431 IPR001005 -
Vra6g1381 777 ProSiteProfiles Myb-like domain profile. 379 429 IPR001005 -
Vra6g1381 777 SUPERFAMILY Homeodomain-like 384 437 IPR009057 -
Vra6g1381 777 MobiDBLite consensus disorder prediction 1 66 - -
Vra6g1381 777 ProSiteProfiles SWIRM domain profile. 161 259 IPR007526 GO:0005515
Vra6g1381 777 PANTHER SWI/SNF COMPLEX-RELATED 58 776 - -
Vra6g1381 777 CDD SANT 386 428 IPR001005 -
Vra6g1381 777 Pfam Myb-like DNA-binding domain 386 428 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1381 Vra-Chr6 27171681 27177366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1381 329 425 EF-hand Containing Proteins AT3G07740 32.075 7.90e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1381 K11649 - gmx:732600 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1381 6 27171681 27177366 Vra6g1381 6 27171681 27177366 ECH
Vra6g1381 6 27171681 27177366 Vra5g0765 5 13035190 13041793 PCT