Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0765 ATGCCAGCTTCTCCTTCAGAAAACCGAAACAGATGGAGGAAGCGCAAGAGAGATTCTCAAGTCGCTCGGCGCCACCCCAAGCACGAGGAGGAGGAGGAAGACGACGAAGAAAACCCCAATGCAGAGGATGACCATGCGGAACGTGAGTACGATTCCGAAGAACAAACGCATCAACACCATAATTCGCAACCACATGTGGAGACGGAGGTTCTCTCAGACCACGGTGTTACCATTTCTCAGTTTCCGGTGGTGATAAAGCGTTCCGTGAACCGTCCTCACTCTTCCGTCACTGCAATTGTGGCTCTGGAGCGAGCCCTTGAGTCTGGAGACAGCAAGGCTCAGAGTGCTCTTGCTCCTCTTGTTATTGAAAACGTGTCTCACGGTCAGCTTCAAGCGCTGTCGGCTGTGCCATCTGATAATTTGGCTTTTGAGGGTGATTCCTCTTTTGTTATAAGTCCACCTGCCATATTGGAAGGTCGCGGGGTTGTTAAGCGCTTTGGAACTAAGGTTCTTGTAGTTCCTATGCATTCAGATTGGTTTTCGCCTGCCACTGTGCATAGGTTAGAGAGGCAAGCAGTGCCACATTTCTTTTCAGGGAAGTCACCCGATCATACTCCCCAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCTATGCATTTGGAGGAGCCTGGGAAGAGGATTACTGTTTCTGATTGCCAGGGTTTGTTGACAGGAGTTGATTTTGAAGATTTGACTCGGATTGTGAGGTTCCTTGATCATTGGGGAATTATTAATTATTGTGTTCAGATATCGAGTCTTGAGTCTTCCAATGTTATGTCTTGCCTGAGGGAGGAACCTAGTGGAGAGGTCCGTGTGCCAGCTGAGGCTTTGAAATCTATTGATAGTTTGATCAAATTTGACAATCCAAGTTGTAAGCTGAAAGCTGACGAAATTTATTCGTCATTGACTGCACGTAATGTGGATGTCTTTGATCTGGAGGACAGAATAAGAGAACATCTTTCGGAGAATCATTGCAATTATTGTTCTCGTCCTCTTCCTCTTGTATACTACCAGTCTCAGAAAGAGGCTGATATTATACTTTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTCTAGATTTTCTAAGGGTGGATACGACAAGGGATTATGGTGAACTAGACGGGGATAATTGGACTGATCAAGAAACTTTACTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAACGAAATTGCTGAGCATGTTGCTACCAAATCAAAAGCACAATGCATTCTTCATTTTCTCCGCCTACCCATGGAAGATGGAAAGTTGGAAAATATTAATGTTCCGAGCATGCCTTTGTCATCCAATGCAATGGATAGAGATGGTAGTGGAAGACTGCATTGTTACTCAAACGGAGATACTGCAGGACCTGTCCATCAAGTGAGAGATACTGACAGCCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCAGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTATCAGTGGATAATTCTGGCAGCACTTCACAGATGGAAGCACCTGGACATGATAATAGGACAAATTCCGAAAGCATAAGATGTCGAGATGGTGGGTCTCATGGAGAAACAGCGGTATCAAATAATAATAATAATGAGGATAAGGCTAAGGTACATGGTTCATGGGGACTAAATGATGGTAGGACAACCCCACTATCTGCTGAGAAAGTTAAAGATGCTGCTAAAGCAGGCCTCTCTGCGGCAGCAATGAAAGCAAAATTATTTGCGGATCATGAAGAGCGAGAAATTCAGAGGTTGTGTGCTAACATAGTTAATCATCAGCTGAAAAGATTAGAGTTGAAGCTGAAACAGTTTGCGGAAATCGAAACATTGTTAATGAAAGAATGCGAACAACTGGAGAGAACCAAGCAAAGGTTTGCTGCTGAACGGTCTCGTGTAATATCAGCACGTCTTGGAACTGCAGGAGCCACACCCACAATGGCTGCATCGGGTGTTGGTCCTTCAATGGCTAGCAATGGCAGCAACAGGCAACAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAGCAATCAATCACTTCATCCACATATGTCCTTTGCCCCACGACCTTCGATGTTTGGGTTGGGGCAAAGATTACCACTATCTATGATACAACAATCACAATCACCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACGTCCAATCATCCATTGTTGAGGCCTGTATCAGGAACAAACTCTGGTTTAGGTTAA 2358 0.4491 MPASPSENRNRWRKRKRDSQVARRHPKHEEEEEDDEENPNAEDDHAEREYDSEEQTHQHHNSQPHVETEVLSDHGVTISQFPVVIKRSVNRPHSSVTAIVALERALESGDSKAQSALAPLVIENVSHGQLQALSAVPSDNLAFEGDSSFVISPPAILEGRGVVKRFGTKVLVVPMHSDWFSPATVHRLERQAVPHFFSGKSPDHTPQKYMECRNCIVAMHLEEPGKRITVSDCQGLLTGVDFEDLTRIVRFLDHWGIINYCVQISSLESSNVMSCLREEPSGEVRVPAEALKSIDSLIKFDNPSCKLKADEIYSSLTARNVDVFDLEDRIREHLSENHCNYCSRPLPLVYYQSQKEADIILCTDCFHDGRFVIGHSSLDFLRVDTTRDYGELDGDNWTDQETLLLLEAMEIYNENWNEIAEHVATKSKAQCILHFLRLPMEDGKLENINVPSMPLSSNAMDRDGSGRLHCYSNGDTAGPVHQVRDTDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSVDNSGSTSQMEAPGHDNRTNSESIRCRDGGSHGETAVSNNNNNEDKAKVHGSWGLNDGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRFAAERSRVISARLGTAGATPTMAASGVGPSMASNGSNRQQMISASPSQPSISGYGSNQSLHPHMSFAPRPSMFGLGQRLPLSMIQQSQSPSSTAMFNAPSNVQPTSNHPLLRPVSGTNSGLG* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0765 785 ProSiteProfiles Myb-like domain profile. 389 439 IPR001005 -
Vra5g0765 785 MobiDBLite consensus disorder prediction 560 574 - -
Vra5g0765 785 Pfam SWIRM-associated region 1 601 678 IPR032451 -
Vra5g0765 785 MobiDBLite consensus disorder prediction 1 69 - -
Vra5g0765 785 ProSiteProfiles SANT domain profile. 392 443 IPR017884 -
Vra5g0765 785 MobiDBLite consensus disorder prediction 747 785 - -
Vra5g0765 785 MobiDBLite consensus disorder prediction 682 714 - -
Vra5g0765 785 Pfam Myb-like DNA-binding domain 396 438 IPR001005 -
Vra5g0765 785 Gene3D - 177 264 IPR036388 -
Vra5g0765 785 CDD SANT 396 438 IPR001005 -
Vra5g0765 785 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 59 784 - -
Vra5g0765 785 Coils Coil 614 634 - -
Vra5g0765 785 Pfam SWIRM domain 174 260 IPR007526 GO:0005515
Vra5g0765 785 MobiDBLite consensus disorder prediction 43 67 - -
Vra5g0765 785 SMART sant 393 441 IPR001005 -
Vra5g0765 785 MobiDBLite consensus disorder prediction 555 587 - -
Vra5g0765 785 Gene3D - 393 443 - -
Vra5g0765 785 ProSiteProfiles Zinc finger ZZ-type profile. 334 388 IPR000433 GO:0008270
Vra5g0765 785 SUPERFAMILY Homeodomain-like 394 447 IPR009057 -
Vra5g0765 785 ProSiteProfiles SWIRM domain profile. 171 269 IPR007526 GO:0005515
Vra5g0765 785 MobiDBLite consensus disorder prediction 689 714 - -
Vra5g0765 785 SUPERFAMILY Homeodomain-like 170 263 IPR009057 -
Vra5g0765 785 PANTHER SWI/SNF COMPLEX-RELATED 59 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0765 Vra-Chr5 13035190 13041793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0765 339 435 EF-hand Containing Proteins AT3G07740 33.962 4.38e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0765 K11649 - gmx:100780440 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1381 6 27171681 27177366 Vra5g0765 5 13035190 13041793 PCT