Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1372 ATGGATTTTAGAAGCAAGGGAATAACATGCCACACGCTTTTCGTATTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTTCTCAGCAGCCAATCAACCCCACAAAGCCAAAAACCTCGCCACCCATCGCCTTTCCTCCTCAGCTGTTTTCAAAGTTCAAGGAAATGTCTACCCTCTTGGGCATTACACAGTGACTCTCAACATTGGATATCCGGCCAAGCCTTACGACCTTGACATAGACTCGGGTAGTGACATCACTTGGGTTCAATGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGACCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGCGGAACAATTGTGTTCTGAAGTGCACTTACCAACAGACCATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATAATGGATCATCTTTGGGTGTGCTTGTCCGGGACTACATTAATTTTCAATTCACCAATGGCTCTGTGGTGCGCCCTAAGATAGCCTTTGGGTGCGGATATGATCAAAAGTATTCTGGTTCTACCTCCCCACCTTCTACAGCAGGAGTCATTGGCCTTGGCAATGGCAGAGCAAGCATTTTAACTCAGCTTCATTCTTTGGGTCTGATACGCAATGTAGTTGGACACTGCCTAAGTTCAAGAGGAGGAGGGTTTTTATTCTTTGGAGATTATCCTGTTCCCACTTCGGGAATTGTTTGGACAACCATGCTGCAGACTTCTTCGGAAAAACACTACAGCTCAGGACCCGCAGAGCTGTTGTTCAACGGAAAAGCTACGAAAGTTAAGGGTCTTCAACTTATCTTTGATAGCGGGAGCTCTTACACATACTTCAACTCCCTGGCGTATCAAGCTGTTGTAAATCTGGTGTCGGAAGATTTAAAGGGGAAACAGTTGACAAGAGCAACCGATGATCCATCACTTCCAATTTGTTGGAAGGGTCCAAAATATTTCAAATCGTTAAGTGATGTCAAGAAATACTTCAAACCCCTAGCATTTAGCTTCACAAAAACTAAGAATGTGCAGTTGCACCTTCCGCCAGAAGCTTATCTTATTATCACTAAACATGGCAATGTCTGCTTGGGGATTCTTGATGGCACCGAAGTAGGACTTGAAAATCTCAACATAATAGGAGACATTTCTTTACTAGATAAAATGGTCATTTATGACAACGAGAAGCAACAGATTGGATGGGCTTCTTCAAATTGTGATAGACTTCCCAATGCGGAACGTGATTTGGAAGGCGATTTTCCACATCCATACGCAGCCAATTTGGGTATATTTGGGAACGGTTACCCTGCATCTTTTGAAAATATAGACGATCAATGA 1362 0.4317 MDFRSKGITCHTLFVLFLLFSAIFPLSFSAANQPHKAKNLATHRLSSSAVFKVQGNVYPLGHYTVTLNIGYPAKPYDLDIDSGSDITWVQCDAPCKGCTKPRDQLYKPNHNLVQCAEQLCSEVHLPTDHNCASPDDQCDYEVEYADNGSSLGVLVRDYINFQFTNGSVVRPKIAFGCGYDQKYSGSTSPPSTAGVIGLGNGRASILTQLHSLGLIRNVVGHCLSSRGGGFLFFGDYPVPTSGIVWTTMLQTSSEKHYSSGPAELLFNGKATKVKGLQLIFDSGSSYTYFNSLAYQAVVNLVSEDLKGKQLTRATDDPSLPICWKGPKYFKSLSDVKKYFKPLAFSFTKTKNVQLHLPPEAYLIITKHGNVCLGILDGTEVGLENLNIIGDISLLDKMVIYDNEKQQIGWASSNCDRLPNAERDLEGDFPHPYAANLGIFGNGYPASFENIDDQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1372 453 SUPERFAMILY Acid proteases 55 418 IPR021109 -
Vra6g1372 453 Gene3D Acid Proteases 238 420 IPR021109 -
Vra6g1372 453 Pfam Xylanase inhibitor C-terminal 275 410 IPR032799 -
Vra6g1372 453 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 2 417 - -
Vra6g1372 453 Pfam Xylanase inhibitor N-terminal 63 235 IPR032861 -
Vra6g1372 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Vra6g1372 453 PANTHER ASPARTYL PROTEASES 2 417 IPR001461 GO:0004190|GO:0006508
Vra6g1372 453 CDD nucellin_like 61 414 IPR033823 GO:0004190
Vra6g1372 453 ProSiteProfiles Peptidase family A1 domain profile. 63 410 IPR033121 -
Vra6g1372 453 Gene3D Acid Proteases 37 235 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1372 Vra-Chr6 26987437 26990801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1372 19 421 Miscellaneous Gene Families AT1G77480 57.673 1.21e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1372 - - gmx:100790299 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1372 6 26987437 26990801 Vra6g1372 6 26987437 26990801 ECH
Vra6g1372 6 26987437 26990801 Vra5g0779 5 13356260 13358950 PCT