Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0779 ATGGCTGTGAAAAGCAGGGGAATTTTACTCTTTTTGCTCCTTTCTTCCATTTTCTCAACCTCCTTCTCAGACACCGATCAGATTCTCAACTCCAAGAAGCCAACACCCTCAACTTCTGTTCATTCCCTTGCTTCCTCTTTCGCTTTTCAGATTAAAGGAAATGTTTATCCAATTGGGTATTACACGGTGAACCTTGCCATTGGCAATCCCCCTAAGCTTTATGATCTTGACATTGACACAGGAAGTGATCTCACTTGGCTTCAGTGTGATGCACCATGTAGAGGGTGCACTATACCTAAGAACCGACTTTACAAACCTCGCGGCAACGTTGTGAAATGTGTGGATCCCTTGTGTACTGGAGTCCAGTCAGCACCTCCCTGTGCTGTAGCAAATGAGCAATGTGACTATGAGGTTGATTATGCAGACCATGGGTCATCTCTGGGTGTGTTAGTCCGAGATTATATTCCAGTTAAATTTACAAATGGATCTTTAGCACGCCCTATTCTGGGCTTCGGGTGTGGATATGATCAAACGCATCCTGGTCAAAATCCCCCACCTACCACAGCAGGTGTTCTTGGCCTTGGAAATGGCAAAACAAGCATTGTATCCCAGCTTCATTCTCTTGGCCTAATTCGTAATGTTATAGGCCACTGCTTAAGTGGAAGAGGAGGAGGATTTTTATTCTTTGGAGATCAATTCATTCCCCAATCTGGAGTTGTTTGGACACCCATATTGCAAAGTTCTTCAGTACAACACTATAAAACAGGTCCGGCAGACCTGCTTTTCGATGGAAAACCTACTTCTGTTAAAGGTCTAGAACTTATCTTCGATAGTGGGAGCTCCTACACATACTTCAATTCCAGAGCTCATAAAGCTCTTGTTGATCTGATAACTAATGATATAAAGGGGAAGCCGTTGATTAGAGCAACTGCTGATTCATCTCTCCCAATTTGTTGGAAGGGTCCAAAGGCCTTCAAATCTTTACATGATGTCACTGGAAATTTTAAGCCACTGGTACTCAGCTTCACAAAATCAAAGAATTCGCTGCTGCAAGTACCACCAGAAGCTTATCTAATTGTCACCAAACATGGCAATGTCTGCTTGGGGATTCTAGACGGCACTGAAATAGGACTGGGAAATATCAACATAATTGGAGATATATTTTTACAAGATAAGATTGTGATTTATGATAACGAGAAACGGCAGATTGGATGGGCCTCTGCCAAGTGCGGTGGACCTTCCAAGTCATGA 1251 0.4309 MAVKSRGILLFLLLSSIFSTSFSDTDQILNSKKPTPSTSVHSLASSFAFQIKGNVYPIGYYTVNLAIGNPPKLYDLDIDTGSDLTWLQCDAPCRGCTIPKNRLYKPRGNVVKCVDPLCTGVQSAPPCAVANEQCDYEVDYADHGSSLGVLVRDYIPVKFTNGSLARPILGFGCGYDQTHPGQNPPPTTAGVLGLGNGKTSIVSQLHSLGLIRNVIGHCLSGRGGGFLFFGDQFIPQSGVVWTPILQSSSVQHYKTGPADLLFDGKPTSVKGLELIFDSGSSYTYFNSRAHKALVDLITNDIKGKPLIRATADSSLPICWKGPKAFKSLHDVTGNFKPLVLSFTKSKNSLLQVPPEAYLIVTKHGNVCLGILDGTEIGLGNINIIGDIFLQDKIVIYDNEKRQIGWASAKCGGPSKS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0779 416 Pfam Xylanase inhibitor C-terminal 273 406 IPR032799 -
Vra5g0779 416 PRINTS Pepsin (A1) aspartic protease family signature 67 87 IPR001461 GO:0004190|GO:0006508
Vra5g0779 416 PRINTS Pepsin (A1) aspartic protease family signature 274 285 IPR001461 GO:0004190|GO:0006508
Vra5g0779 416 PRINTS Pepsin (A1) aspartic protease family signature 382 397 IPR001461 GO:0004190|GO:0006508
Vra5g0779 416 SUPERFAMILY Acid proteases 54 410 IPR021109 -
Vra5g0779 416 PANTHER ASPARTYL PROTEASES 3 412 IPR001461 GO:0004190|GO:0006508
Vra5g0779 416 Pfam Xylanase inhibitor N-terminal 61 231 IPR032861 -
Vra5g0779 416 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 274 285 IPR001969 GO:0004190|GO:0006508
Vra5g0779 416 Gene3D Acid Proteases 232 412 IPR021109 -
Vra5g0779 416 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 412 - -
Vra5g0779 416 ProSiteProfiles Peptidase family A1 domain profile. 61 406 IPR033121 -
Vra5g0779 416 Gene3D Acid Proteases 36 231 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0779 Vra-Chr5 13356260 13358950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0779 31 410 Miscellaneous Gene Families AT1G44130 57.441 2.05e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0779 - - gmx:100803640 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1372 6 26987437 26990801 Vra5g0779 5 13356260 13358950 PCT