Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1024 ATGGAAGACGCCGGGAAACCTCTGAAGTCCGGCAACCCATCGCGTAAGGTGGTTGATTTGGCTGCCGGAGAAGCACACAATCTCGTTCTTACTGGGGATGGCAGTGTGTACAGTTGGGGTAGGGGAATGTTTGGAAGGATTGGGAGTGGCTCAGAAAAGGATGAGCTTTTTCCAGTACAACTCAAATTTGGAAACGCGAATCCAAATGGAACACAAGACACTGTCAAGATCGTGGGAATTGCTGCTGGTGCTTATCATAGTCTCGCTCTTGCAGAAGATGGAGCTGTTTGGTCTTGGGGTTACAATTTCTATGGTCAACTTGGTACAAATGGAGAGAAATCACATGACAAAGAATATGAGGTTGGAGACAATTCTTTAGTTCCCCGGTTACTGAACAGGTTTGATGAATTGCACCCTGTCAATTCTTCATCGGATGTGTCTGAAACAGAAGCCAAAACATCACTTAAGATATGTGCTATCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAACCGTGGGACCCTATGGATGTGGGGAAACTGCCCACAGCAAAGTAAAGAAGGTGAGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTAGGGATTTTCTGGGTCGATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATATCGTAGCTCTGGTTAGTGCTGGCGAATCATACAATGGTGAAGATCTAGTATGCTACTCTTGGGGTTATAACACCCGTGGCCAATTGGGCTTGGGGGACAGAGAGAACAGGCTGCATCCGGAAGTTGTTAAAACATTTGATGAGGAATCACCCTATGAGGTGGCATGTGGTGCCTATCACACTGCTTTGCTAACTCGTATAAAGAAAAGTAGTAGTGACACATTAGACAGCACATGCTGGACCTTTGGCCTTGGAGATAATGGCCAGCTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTAACCCTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGCGTAGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGAGCTGGAACAGATTCTGGTGATGCACTGTCTCCCCGTCTTATGTCATGGAAGCCAAATCAACCTAAATTCCCAGATCCAGTTAAACTTGCATGTGGGGCCGCACATACTGTTATAATTGCGCAAGGGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGAAGTGGAGTTCTTGGAGATGGTAAAGGAGTAGATTGTTACACTCCCACGCTCGTACAATGGCCTCAAATGATGGATGACGCTGAGGAAGAGGAAGTAAAAAGCGATGGTGAGCAAGATAAGGCTAGAGAAAAGGAGACTGAAGCAACAACTGAAGCAGAAGAGAAACTATCCTCAGCGTTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTGTGATTAAAAAATATGCCAGTATACTGCATGGTTCTGTTTTTGGAAAGCCCTTTGACGAGCAAGATATCCCTGATTCATTGCAGAATTCAGGTTCATTTGACATGGGAAAAGAATGGGAGAAGATGTTAGAGACCGCAGATCATAGGAAGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGTCTCCAATCTTCAGAGGTGTAA 1740 0.4471 MEDAGKPLKSGNPSRKVVDLAAGEAHNLVLTGDGSVYSWGRGMFGRIGSGSEKDELFPVQLKFGNANPNGTQDTVKIVGIAAGAYHSLALAEDGAVWSWGYNFYGQLGTNGEKSHDKEYEVGDNSLVPRLLNRFDELHPVNSSSDVSETEAKTSLKICAIKAGGMMSLAIDNRGTLWMWGNCPQQSKEGELALVSSFTPTPVRDFLGRSVVKVACGNEHIVALVSAGESYNGEDLVCYSWGYNTRGQLGLGDRENRLHPEVVKTFDEESPYEVACGAYHTALLTRIKKSSSDTLDSTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVTLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSWKPNQPKFPDPVKLACGAAHTVIIAQGGYRMWSWGRGRSGVLGDGKGVDCYTPTLVQWPQMMDDAEEEEVKSDGEQDKAREKETEATTEAEEKLSSALNELKLLQTKLSVIKKYASILHGSVFGKPFDEQDIPDSLQNSGSFDMGKEWEKMLETADHRKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEV* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 410 IPR000408 -
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 348 IPR000408 -
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 173 IPR000408 -
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 174 226 IPR000408 -
Vra5g1024 579 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Vra5g1024 579 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Vra5g1024 579 PRINTS Chromosome condensation regulator RCC1 signature 213 229 IPR000408 -
Vra5g1024 579 PRINTS Chromosome condensation regulator RCC1 signature 338 356 IPR000408 -
Vra5g1024 579 PRINTS Chromosome condensation regulator RCC1 signature 407 428 IPR000408 -
Vra5g1024 579 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 579 - -
Vra5g1024 579 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 273 283 IPR000408 -
Vra5g1024 579 SUPERFAMILY RCC1/BLIP-II 12 442 IPR009091 -
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 286 IPR000408 -
Vra5g1024 579 MobiDBLite consensus disorder prediction 455 473 - -
Vra5g1024 579 Coils Coil 448 490 - -
Vra5g1024 579 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Vra5g1024 579 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 579 - -
Vra5g1024 579 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 213 223 IPR000408 -
Vra5g1024 579 MobiDBLite consensus disorder prediction 447 475 - -
Vra5g1024 579 Gene3D - 3 232 IPR009091 -
Vra5g1024 579 Gene3D - 233 482 IPR009091 -
Vra5g1024 579 Pfam Regulator of chromosome condensation (RCC1) repeat 93 170 IPR000408 -
Vra5g1024 579 Pfam Regulator of chromosome condensation (RCC1) repeat 238 283 IPR000408 -
Vra5g1024 579 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Vra5g1024 579 Pfam Regulator of chromosome condensation (RCC1) repeat 298 344 IPR000408 -
Vra5g1024 579 Pfam Regulator of chromosome condensation (RCC1) repeat 348 407 IPR000408 -
Vra5g1024 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1024 Vra-Chr5 16644765 16647898 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1024 - - pvu:PHAVU_009G110000g 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1024 5 16644765 16647898 Vra5g1024 5 16644765 16647898 ECH
Vra5g1024 5 16644765 16647898 Vra6g1142 6 18157388 18172203 PCT