Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1005 ATGAGAAACGAAGAGGTTGGAGCTTGGTTGAATGGGTTTCCTAACCTTCACCGTGACACGCCACAACCTTCCACTGCTCCCACCAACACCTTTCCGATGTGGGGCGAGAACAACATGATCAACCACGACCATGATGTCGATGTGTTGCTGTCTAATGATTTTGCTAGAATGGCTGTTTTTGGTGAACAAGGGGATGGTGGTAACAAAACTAAAGGATATGAACATGGACATGGGTACGGTGTTGATGTTATGGACTCATCGTACACACATGCATTCTCACACTCACACTCAAACCCACGCTCACTCTCACTCTCACTCTCACTCTCACACACACCTAGTAGTTCTTTGGATGGATATGTACATGTTGGCGAAGAAAGGGTTGTCCCATCGTCTGCTTGGGGTGTGAAGGCTTCTTCTGATGTGGAGGGACACACTTTCGGACCTCCAATGGAGTTTAACCAAAGGAGGAACACTTGTTATAGAAACCTTCAAATGCAGAACCCGTTTCATGCCAGAGGGTCATATGCAATGGATTGGGACATGAGTAGTTCCTTTATGGTCTCTGAAAGTTACCCCAAGCTTACTACGAATATGAACACTCCATCGCCTCATTTTTTCCCTGCAGTGAAAGAAATAGCACCAACAAGGGTGACCGTAGCCCCCGGTGGTGAATTTTCGCATTCTAGAGTGGACCCTGTGGCGTTTCAATGTGATGGTGGATTTATCATGCAAGAGAGGGAGGTAAAATGGTGTGTTGGAGGAAAAGGGTGCAATTCTCTGAGGGGTTACAGAGACAGTTTACCTTCGCCAGCTCAAGCAGTGGCAGATGAAGTTCCTCAATTCATTTCTTCTCGTGTTCCGATTAGACCTGAAAAGAATGGCATTCTTTCAAGTGACATTTCTCTTTCGCCGCGGCCATTGTTGTTCAAGTTTGGTCCTCTGGTTAGGTTACAAGGTTACATTTCCCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCTTACAGAAGATGGTTGATGAGGGCACCTCTGAAGATGCACAAATCGTGTTTAACGGAGTTATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTACCTCGTGCAAAAGCTGATTGATGTGTGTGCTGAAGATGAAAGATTGCATATTGTGTCAATGTTGACTAAAGAACCATGGCAACTACTGAAAACCTCTTTCAATACCCACGGGACTCGGGTGGTTCAGAAATTGATTGCTACTGTGAACTCTAGAAATCAAATTGCATTGCTGAGGTCTGCCATTCAACCTGATTTTCTTGATCTTGTCAAGGATCTGAATGGAAATCATGTTATACAACGTTGCTTGCAATACTTCAGTTGTAAAGATAACGAGTTTATTTTTGATGCTGCAACAAAGTTCTGTGTTGACATAGCTACTCACGAACATGGGTGTTGTGTACTACAACGTTGCATTGATTACTCCACCGGAAAGTACCAAGATAAGCTGATAAAGGAAATATGCAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAGTATATTATAGAGATGGAGATCCCAAGTGCCTCATCGAAGCTGCATTCCCAGTTCAAAGGGAACTACGTAAACCTTTCCATGCAAAAGTTTAGCAGTCACGTGGTTGAAAAATGCCTCATGCATATTTCAGAGAGCAGGTCCAGAATAGTCCAAGAAATTTTATCTTTTCCTCACTTTGAGCGCTTCCTACCAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTTGGAGTCACCAAGGGTTCTCTGCATACATCTCTGGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAAAGGATTTTCTCAAGGAACCTACTTAATAAGTGA 1902 0.439 MRNEEVGAWLNGFPNLHRDTPQPSTAPTNTFPMWGENNMINHDHDVDVLLSNDFARMAVFGEQGDGGNKTKGYEHGHGYGVDVMDSSYTHAFSHSHSNPRSLSLSLSLSHTPSSSLDGYVHVGEERVVPSSAWGVKASSDVEGHTFGPPMEFNQRRNTCYRNLQMQNPFHARGSYAMDWDMSSSFMVSESYPKLTTNMNTPSPHFFPAVKEIAPTRVTVAPGGEFSHSRVDPVAFQCDGGFIMQEREVKWCVGGKGCNSLRGYRDSLPSPAQAVADEVPQFISSRVPIRPEKNGILSSDISLSPRPLLFKFGPLVRLQGYISHLAKDQNGCRFLQKMVDEGTSEDAQIVFNGVIDDVVELMMDPFGNYLVQKLIDVCAEDERLHIVSMLTKEPWQLLKTSFNTHGTRVVQKLIATVNSRNQIALLRSAIQPDFLDLVKDLNGNHVIQRCLQYFSCKDNEFIFDAATKFCVDIATHEHGCCVLQRCIDYSTGKYQDKLIKEICRHGLILAQDPFGNYVVQYIIEMEIPSASSKLHSQFKGNYVNLSMQKFSSHVVEKCLMHISESRSRIVQEILSFPHFERFLPDPYANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNLLNK* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1005 633 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 20 633 - -
Vra6g1005 633 CDD Pumilio 319 628 IPR033712 GO:0003723
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 500 535 IPR001313 GO:0003723
Vra6g1005 633 Gene3D - 310 631 IPR011989 -
Vra6g1005 633 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 20 633 - -
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 464 499 IPR001313 GO:0003723
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 316 351 IPR001313 GO:0003723
Vra6g1005 633 Coils Coil 631 633 - -
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 352 387 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 464 499 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 316 351 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 573 608 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 352 387 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 500 535 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 536 570 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 391 426 IPR001313 GO:0003723
Vra6g1005 633 SMART pum_5 428 463 IPR001313 GO:0003723
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 428 463 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 584 595 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 508 523 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 401 423 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 321 351 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 540 573 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 469 502 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 357 389 IPR001313 GO:0003723
Vra6g1005 633 Pfam Pumilio-family RNA binding repeat 433 463 IPR001313 GO:0003723
Vra6g1005 633 ProSiteProfiles Pumilio RNA-binding repeat profile. 536 574 IPR001313 GO:0003723
Vra6g1005 633 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 291 633 IPR033133 GO:0003723
Vra6g1005 633 SUPERFAMILY ARM repeat 317 627 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1005 Vra-Chr6 13105052 13108821 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1005 - - pvu:PHAVU_008G173000g 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1005 6 13105052 13108821 Vra6g1005 6 13105052 13108821 ECH
Vra6g1005 6 13105052 13108821 Vra5g0843 5 14241524 14244565 PCT