Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0843 ATGGACGCACACATCATGTCAGAGGACAGAAGAGCAACAGAGGAAGGAGGAGAAACGAGGTTGGTTGGAAATCAGAATGCATCCCATCCCACAGCGGCATCCACACCACTGTCCTGTCTCCGCGTCCTTCACCCTGACCACGTGGCTGTTGGGTCCCCCGTTACCAGGGTTCCTCCATATTCAGCACCACCTCCTTCTCCAAAATTCTGGGTGGACCATGACCCTTCCACTCTCACTCACACCCACACCAACTGGGCCCATGATTCCTCACTGATTTCCGATTTCTCCAAAATGAATCTCCTCGATCAAATCCAAACCGATGTGGACCCCTGTCCTTATTTTAACCATCCAGGAACCCTTCCAAACCCGTATGATTCTGGTTTCAATGAAACAGAAAACCTTCCATACCATCACCATGTCAACAATGCCCGCTTGTTCAATGAACAAGGAATTCTCCCCTATCATGTTAACAATGCTGGGTTGTTCACTGAAACCCTCCCCTATCACCACCATGTTAATAACGCTGGACTTTTCGATAAAGGTCACACTTTTGACACCCCAGATGATCACGGTAACCTTCTGTATCATCATCCCGTGGACCAGAGGAGGAATCAGTTACAGGCCACAAGTAGTGGCAACTATCCCATTCTTCGTGATCGTTATATGGCTCCACATTCTTCCGGAGGGTTCAATAGCTTCGTCAGGTTATCTCCTATTGCGGCTATGAATTGCAATGCTAATAATCCTTCGCATCATTATCTTTCAGCGAAAGAGAAGACTGAACCTCCTCACTTTCTGCCTCCAAGGAGAGTGGGGGGAGACCCTTCTGCTTTTAGGTGTGACAATAGCATTATCTTGCAAGGGAGAGATTCAAGACACTGCTTTGAGAATGGGTATGGTTCTTCTTATAGAAGGGGTCCTCCCCGTGACGAGTTTTGTGTGAGTGGCACTGTTTCTAAGAACTTTTCTCCTGGTGGTCCTTCTGGTCAAAACGTTGGGGAATTCTCGCTGCCCATGCCACTGGATTATTATTCTGTGCCGGACTCTCAGCGTTACATTTACAACCTGGCAAAGGATCAGCACGGTTGTCGTTTCCTGCAGCGGAAGGTTGATGAAGGAAGCTTCGAAGATATGTGTATTGTATTTGAGGGAATCATCGGGAGTGTTGTTGAACTTATGGTGGACTCTTTCGGGAATTATCTGGTGCAGAAGTTGCTCGATGTTTGCACCGATCATCAACGACTGCAGATTGTGCTCATGTTGACTAATCGACCAGGCCAGCTCGTTAGAATCTCTCTGAATACTCACGGCACGCGGGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAAATTTCATTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCACGTCATTCAACGTTGCTTGCAATGCTTCAGCTCTCAAGATAACCAGTTTATCTTTGATGCTTCTGTGAAATATTGTGTTGAAGTAGCTACTCATCAGCATGGATGCTGTGTACTGCAACGCTGTATTTATTACTCTATGGGTAAAAATCGAGATAGGCTGATCTCAGAAATATGCAAGCATGGACTTCTCCTCGCCCAGGATCCATTTGGAAACTATGTTGTTCAATATATTATAGAAACTGATACTCCAACTGCCGTAGCCAAAATGCTTGGTCAGTTTAAAGGGAATTATGTACATTTGTCTACACAGAAATTCAGCAGTCATGTGGTTGAAAAATGTCTCAGAAATGTTGGAGATACGAGGTCCAGGATAGTTCGAGAATTGCTGGCTGCCCCTCATTTTGAACGACTTTTGCAAGATCCATATGCTAATTATGTCATTCAATCTGCTCTCACCTTCACCAAGGGCCTTCTGCATGCGTCTTTGGTTGATGCAATTCGTAATTACAAAATGTTGCGCTCCAGTCCTTTTTGCAAGAGGATTTTCTCGGGAAATTTGCTGAGGAAGTGA 1998 0.4555 MDAHIMSEDRRATEEGGETRLVGNQNASHPTAASTPLSCLRVLHPDHVAVGSPVTRVPPYSAPPPSPKFWVDHDPSTLTHTHTNWAHDSSLISDFSKMNLLDQIQTDVDPCPYFNHPGTLPNPYDSGFNETENLPYHHHVNNARLFNEQGILPYHVNNAGLFTETLPYHHHVNNAGLFDKGHTFDTPDDHGNLLYHHPVDQRRNQLQATSSGNYPILRDRYMAPHSSGGFNSFVRLSPIAAMNCNANNPSHHYLSAKEKTEPPHFLPPRRVGGDPSAFRCDNSIILQGRDSRHCFENGYGSSYRRGPPRDEFCVSGTVSKNFSPGGPSGQNVGEFSLPMPLDYYSVPDSQRYIYNLAKDQHGCRFLQRKVDEGSFEDMCIVFEGIIGSVVELMVDSFGNYLVQKLLDVCTDHQRLQIVLMLTNRPGQLVRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSSQDNQFIFDASVKYCVEVATHQHGCCVLQRCIYYSMGKNRDRLISEICKHGLLLAQDPFGNYVVQYIIETDTPTAVAKMLGQFKGNYVHLSTQKFSSHVVEKCLRNVGDTRSRIVRELLAAPHFERLLQDPYANYVIQSALTFTKGLLHASLVDAIRNYKMLRSSPFCKRIFSGNLLRK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0843 665 Gene3D - 341 661 IPR011989 -
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 423 458 IPR001313 GO:0003723
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 496 531 IPR001313 GO:0003723
Vra5g0843 665 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 335 665 - -
Vra5g0843 665 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g0843 665 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 335 665 - -
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 384 420 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 568 602 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 496 531 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 532 567 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 423 458 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 460 495 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 348 383 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 384 419 IPR001313 GO:0003723
Vra5g0843 665 SMART pum_5 605 640 IPR001313 GO:0003723
Vra5g0843 665 CDD Pumilio 353 659 IPR033712 GO:0003723
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 532 567 IPR001313 GO:0003723
Vra5g0843 665 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 324 665 IPR033133 GO:0003723
Vra5g0843 665 MobiDBLite consensus disorder prediction 19 33 - -
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 465 495 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 353 385 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 572 605 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 500 534 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 613 629 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 427 457 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 389 418 IPR001313 GO:0003723
Vra5g0843 665 Pfam Pumilio-family RNA binding repeat 539 560 IPR001313 GO:0003723
Vra5g0843 665 MobiDBLite consensus disorder prediction 1 17 - -
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 603 640 IPR001313 GO:0003723
Vra5g0843 665 SUPERFAMILY ARM repeat 349 658 IPR016024 -
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 345 383 IPR001313 GO:0003723
Vra5g0843 665 ProSiteProfiles Pumilio RNA-binding repeat profile. 460 495 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0843 Vra-Chr5 14241524 14244565 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0843 - - pvu:PHAVU_009G030400g 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0843 5 14241524 14244565 Vra5g0843 5 14241524 14244565 ECH
Vra6g1005 6 13105052 13108821 Vra5g0843 5 14241524 14244565 PCT