Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1002 ATGGCAGCCAAGGCAAAGAACAACAAGGTAGGGAGTGAATTGGGGTGTGGCCTCATGGGTAGAATTCTCCATCCCAAAAGCCACAAGCTGAGAAAAGCCTCTGTTCACTCCCTACCCTTGAAGAATCCACTTAGTGATGATGATGGCAAAAGTCAAGAATCAAAGAAGACCCCAAGTGAAGAATTAAAGGCTACCAAAAAAAGCTGCACTGACACTGAGCCACTCATAATGAGTGGTGCACAACAGAAACCGGCCCGAAAGAGTGCCTCTGTTCATCAACAACAACTTAGTACGTACCCAAACAGTCAAAATCAAAGGCATTCGGATGCTGTTGCAAGAAGCTCAACATCATCATCATCATCTCCTAGAACTTCAATTTCAACTCACAATAAGGTTCAACAAAACAAGGACAAGAATCAGGAGAACAAGCCATATAGAGACCCCACCGGAAATTCTCTTGCACTTGCTAGGATAAGCACGGGCAATGAGAACAATAAGTCTCAATTGAAGCTCACTGGGAATTTGCTAGTGAATAATACCCCAAGGAGAAAGAGTGTAGAGTACATGCCTAAACATGCAGAGTTGAACTCTGTGCCCGTTTCCTACTCCAATACAAGCAAAGGCTTGATGGGGAATATCATGAGGAGGAACAGCACTGGCAATGAGCTTGGACAGTTTTTTAGTCCAAGGCAGAAAAAAGTGGACCCTGAAGTGTTGAAATCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCTTTGACTTTGTATGACAGAGCAATTGCTCTTGATTCAAATATGGCAACGTACCATTGCAACAGGAGTGCAGCTTTAATTGGCTTAGGAAGGCTTCAAGAAGCAATTTTTGAGTGTGAGGAATCTATCAAACTGGACCCGTCGTATGTCAGAGCTCACAACCGTTTGGCCACAATATATTTCAGGTTGGGAGAAGCAGAAAAAGCACTGGATTGCAATCAATCAACCGCAAGTGCTGGTTCAATACTTGCTTTCCAAGCTCAGACTCTTCAAAATCACCTTAACAAATGCACAGAAGCACGGAAAGTAAATGCATGGAGTGATATACTAAGGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCGCAGGTCTATGCTTTACAAACTGAAGCCTTTCTGAAGCTCCTAAGATATCAAGAGGCTTATGCCATCTATGAAAATATGCCAAAATTTCCACTTGATTGGTGTACCAAGGTATTTGGTCCGGTTCGGAGCGCTTACCTGTTGATGATAGGAGCAATGGTTTACTTGGCCGCTGGCAGGTTTGAGGAAGCTGTGACAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAGGAAATAGAGAGGTGAATGCAATGGTAAGGAGGACCAGAGCAGCAACATCAGCTAGAATGAGTGGGAACTTGCTCTTCAAGGCCTCAAAATTCACCGAAGCATGTGCCGTGTACAACGAAGGACTTGATCATGATCCTCACAACTCAGTTCTGTTATGCAACAGAGCTGCTTGTCGTTCTAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAACGCCGCACTAATGTTTCAGCCAGGTTATAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAATGCCAAGTTAGAACGATGGGAAGCTGCTATTCAAGACTATGAAATGCTATTGAGAGAAAGGCCAGGGGATGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAGCTCCAACTCAAGATGCTACGCGGTGAAGATATCAAGGACTTGAAATTTGGTTCGAACTTGGTTTTCATCTCAAGCAATGATCGGTTCAGACATTATGTAACCTCACCTGGGATGGCTGTGGTGCTCTTTAGCAACAAGGCAACCCACAAGAAAGTGTTACTTATGTTGGAACAAACCAGCAAAAGATTCCCATCAGTTCATTTCCTCAAGGTGGAAATTGAAGACCACCCTTACTTAGCAAAGTCTGAAGGTGTGAACTCCATCCCAGCTTTCAGAGTATACAAAAACGGATCAAGAGTCAAAGAAATTTCAGGCAACAACTACGAGTTGTTAGAAAGATCAGTTGAATTATATAGTAGATGA 2106 0.4364 MAAKAKNNKVGSELGCGLMGRILHPKSHKLRKASVHSLPLKNPLSDDDGKSQESKKTPSEELKATKKSCTDTEPLIMSGAQQKPARKSASVHQQQLSTYPNSQNQRHSDAVARSSTSSSSSPRTSISTHNKVQQNKDKNQENKPYRDPTGNSLALARISTGNENNKSQLKLTGNLLVNNTPRRKSVEYMPKHAELNSVPVSYSNTSKGLMGNIMRRNSTGNELGQFFSPRQKKVDPEVLKSMGNEAYKQGRFEEALTLYDRAIALDSNMATYHCNRSAALIGLGRLQEAIFECEESIKLDPSYVRAHNRLATIYFRLGEAEKALDCNQSTASAGSILAFQAQTLQNHLNKCTEARKVNAWSDILRETQSAISLGADSAPQVYALQTEAFLKLLRYQEAYAIYENMPKFPLDWCTKVFGPVRSAYLLMIGAMVYLAAGRFEEAVTAAQQAAKVDPGNREVNAMVRRTRAATSARMSGNLLFKASKFTEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMFQPGYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKKVLLMLEQTSKRFPSVHFLKVEIEDHPYLAKSEGVNSIPAFRVYKNGSRVKEISGNNYELLERSVELYSR* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1002 701 SUPERFAMILY TPR-like 236 458 IPR011990 GO:0005515
Vra6g1002 701 Pfam Thioredoxin 631 689 IPR013766 -
Vra6g1002 701 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 698 IPR044534 -
Vra6g1002 701 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Vra6g1002 701 MobiDBLite consensus disorder prediction 71 133 - -
Vra6g1002 701 MobiDBLite consensus disorder prediction 46 68 - -
Vra6g1002 701 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515
Vra6g1002 701 Pfam TPR repeat 243 280 - -
Vra6g1002 701 Pfam Tetratricopeptide repeat 430 502 - -
Vra6g1002 701 SUPERFAMILY Thioredoxin-like 586 696 IPR036249 -
Vra6g1002 701 MobiDBLite consensus disorder prediction 27 152 - -
Vra6g1002 701 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 698 - -
Vra6g1002 701 SUPERFAMILY TPR-like 473 585 IPR011990 GO:0005515
Vra6g1002 701 CDD TRX_family 610 697 - -
Vra6g1002 701 Pfam Tetratricopeptide repeat 505 535 IPR001440 GO:0005515
Vra6g1002 701 Pfam Tetratricopeptide repeat 539 569 IPR019734 GO:0005515
Vra6g1002 701 Gene3D Tetratricopeptide repeat domain 234 588 IPR011990 GO:0005515
Vra6g1002 701 Coils Coil 543 563 - -
Vra6g1002 701 Gene3D Glutaredoxin 596 700 - -
Vra6g1002 701 SMART tpr_5 270 303 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 304 337 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 469 502 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 503 536 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 236 269 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 423 456 IPR019734 GO:0005515
Vra6g1002 701 SMART tpr_5 537 570 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1002 Vra-Chr6 12929847 12933205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1002 K09527 - gmx:100782846 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1002 6 12929847 12933205 Vra6g1002 6 12929847 12933205 ECH
Vra6g1002 6 12929847 12933205 Vra5g0839 5 14178417 14182256 PCT